SMTL ID : 2iwg.1

COMPLEX BETWEEN THE PRYSPRY DOMAIN OF TRIM21 AND IGG FC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- GAL- MAN: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN.1: 12 residues within 4Å: Chain A: F.5, F.7, P.8, P.9, K.10, D.13, E.22, T.24, D.29, Q.59, N.61 Ligands: FUC.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:F.7, A:K.10, A:D.13, A:E.22, A:E.22, A:T.24, A:T.24 NAG-NAG-BMA-MAN-NAG-GAL-MAN.2: 13 residues within 4Å: Chain C: F.5, F.7, P.8, P.9, K.10, D.13, E.22, T.24, V.28, D.29, Q.59, N.61 Ligands: FUC.4 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:F.7, C:K.10, C:D.13, C:E.22, C:E.22, C:E.22, C:T.24

2 x FUC: alpha-L-fucopyranose(Non-functional Binders)

FUC.3: 3 residues within 4Å: Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN.1, NAG-NAG-BMA-MAN-NAG-GAL-MAN.1, NAG-NAG-BMA-MAN-NAG-GAL-MAN.1 No protein-ligand interaction detected (PLIP) FUC.4: 3 residues within 4Å: Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN.2, NAG-NAG-BMA-MAN-NAG-GAL-MAN.2, NAG-NAG-BMA-MAN-NAG-GAL-MAN.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

James, L.C. et al., Structural Basis for Pryspry-Mediated Tripartite Motif (Trim) Protein Function. Proc.Natl.Acad.Sci.USA (2007)

Release Date

2007-03-27

Peptides

IG GAMMA-1 CHAIN C: AC
52 KDA RO PROTEIN: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

B
B

D
E

IG GAMMA-1 CHAIN C

52 KDA RO PROTEIN

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