SMTL ID : 2j0y.2 (1 other biounit)

L-ficolin complexed to b-1,3-D-glucan

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-trimer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 1 residues within 4Å: Chain B: N.145 No protein-ligand interaction detected (PLIP)

1 x BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose

BGC-BGC-BGC-BGC.2: 8 residues within 4Å: Chain C: D.63, W.64, A.65, T.66, E.120, Q.153, N.155 Ligands: BGC.4 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.66, C:T.66

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain B: D.154, D.156, N.158, G.160 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.156, B:N.158, B:G.160, H2O.3, H2O.3 CA.5: 4 residues within 4Å: Chain C: D.154, D.156, N.158, G.160 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.154, C:D.156, C:N.158, C:G.160, H2O.5 CA.6: 2 residues within 4Å: Chain C: D.152, Q.153 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.152, H2O.5, H2O.5

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.4: 7 residues within 4Å: Chain C: D.59, Y.61, R.62, D.63, T.66, K.151 Ligands: BGC-BGC-BGC-BGC.2 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Y.61, C:D.63, C:D.63, C:D.63, C:D.63, C:K.151

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain C: N.145 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garlatti, V. et al., Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins. Embo J. (2007)

Release Date

2007-01-23

Peptides

FICOLIN-2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

FICOLIN-2

Related Entries With Identical Sequence