SMTL ID : 2j3g.2 (1 other biounit)

L-ficolin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 1 residues within 4Å: Chain B: N.145 No protein-ligand interaction detected (PLIP)

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.154, D.156, N.158, T.159, G.160 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.154, A:D.154, A:D.156, A:N.158, A:G.160 CA.3: 4 residues within 4Å: Chain B: D.154, D.156, N.158, G.160 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.154, B:D.156, B:N.158, B:G.160, H2O.3 CA.5: 4 residues within 4Å: Chain C: D.154, D.156, N.158, G.160 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.154, C:D.154, C:D.156, C:N.158, C:G.160

1 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Non-covalent)

P4C.4: 7 residues within 4Å: Chain A: D.55, R.186 Chain B: D.102, F.103, D.105, K.209, V.210 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.186, B:K.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garlatti, V. et al., Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins. Embo J. (2007)

Release Date

2007-01-23

Peptides

FICOLIN-2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

FICOLIN-2

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