SMTL ID : 2j47.1

Bacteroides thetaiotaomicron GH84 O-GlcNAcase in complex with a imidazole-pugnac hybrid inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x GDV: (5R,6R,7R,8S)-8-(ACETYLAMINO)-6,7-DIHYDROXY-5-(HYDROXYMETHYL)-N-PHENYL-1,5,6,7,8,8A-HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-2-CARBOXAMIDE(Non-covalent)

GDV.1: 19 residues within 4Å: Chain A: G.135, F.136, Y.137, K.166, D.242, D.243, C.278, Y.282, W.286, T.310, V.314, I.315, W.337, N.339, V.342, D.344, Y.345, N.372, H.433 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.282, A:T.310, A:W.337 Hydrogen bonds: A:G.135, A:Y.137, A:K.166, A:K.166, A:D.242, A:D.243, A:D.243, A:Y.282, A:N.339, A:D.344, A:N.372 pi-Stacking: A:W.286

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Y.137, D.344, Y.345, R.347, Y.550, Q.551 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.344, A:R.347, A:Q.551, A:Q.551 Water bridges: A:Y.550

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shanmugasundaram, B. et al., Inhibition of O-Glcnacase by a Gluco-Configured Nagstatin and a Pugnac-Imidazole Hybrid Inhibitor. Chem. Commun. (2006)

Release Date

2006-10-03

Peptides

GLUCOSAMINIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLUCOSAMINIDASE

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