SMTL ID : 2j7t.1

Crystal structure of human serine threonine kinase-10 bound to SU11274

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

14 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.2: 1 residues within 4Å: Chain A: G.146 No protein-ligand interaction detected (PLIP) CA.3: 2 residues within 4Å: Chain A: E.298, E.301 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.301, H2O.5, H2O.5, H2O.5 CA.4: 2 residues within 4Å: Chain A: E.298, E.301 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.298, A:E.298, A:E.301, A:E.301 CA.5: 1 residues within 4Å: Chain A: E.219 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.219, A:E.219, H2O.3, H2O.4, H2O.4 CA.6: 3 residues within 4Å: Chain A: Q.120, S.249, E.251 No protein-ligand interaction detected (PLIP) CA.7: 2 residues within 4Å: Chain A: E.109, E.298 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.109, H2O.2, H2O.5 CA.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.11: 1 residues within 4Å: Chain B: G.146 No protein-ligand interaction detected (PLIP) CA.12: 2 residues within 4Å: Chain B: E.298, E.301 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.301, H2O.10, H2O.10, H2O.10 CA.13: 2 residues within 4Å: Chain B: E.298, E.301 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.298, B:E.298, B:E.301, B:E.301 CA.14: 1 residues within 4Å: Chain B: E.219 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.219, B:E.219, H2O.8, H2O.9, H2O.9 CA.15: 3 residues within 4Å: Chain B: Q.120, S.249, E.251 No protein-ligand interaction detected (PLIP) CA.16: 2 residues within 4Å: Chain B: E.109, E.298 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.109, H2O.7, H2O.10

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.8: 3 residues within 4Å: Chain A: V.299, M.300, E.301 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.299 Hydrogen bonds: A:V.299 ACT.17: 3 residues within 4Å: Chain B: V.299, M.300, E.301 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.299 Hydrogen bonds: B:V.299

2 x 274: (3Z)-N-(3-CHLOROPHENYL)-3-({3,5-DIMETHYL-4-[(4-METHYLPIPERAZIN-1-YL)CARBONYL]-1H-PYRROL-2-YL}METHYLENE)-N-METHYL-2-OXOINDOLINE-5-SULFONAMIDE(Non-covalent)

274.9: 16 residues within 4Å: Chain A: L.27, A.48, K.50, E.66, V.79, I.93, I.95, E.96, F.97, C.98, G.101, A.102, A.105, L.149, A.159, D.160 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.48, A:K.50, A:V.79, A:I.93, A:I.95, A:I.95, A:L.149 Hydrogen bonds: A:E.96, A:C.98, A:C.98, A:A.102, A:D.160 Water bridges: A:F.161 274.18: 16 residues within 4Å: Chain B: L.27, A.48, K.50, E.66, V.79, I.93, I.95, E.96, F.97, C.98, G.101, A.102, A.105, L.149, A.159, D.160 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:A.48, B:K.50, B:V.79, B:I.93, B:I.95, B:I.95, B:L.149 Hydrogen bonds: B:E.96, B:C.98, B:C.98, B:A.102, B:D.160 Water bridges: B:D.160, B:F.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pike, A.C.W. et al., Activation Segment Dimerization: A Mechanism for Kinase Autophosphorylation of Non-Consensus Sites. Embo J. (2008)

Release Date

2006-11-07

Peptides

SERINE/THREONINE-PROTEIN KINASE 10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SERINE/THREONINE-PROTEIN KINASE 10

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