SMTL ID : 4equ.1

Human STK-10 (LOK) kinase domain in DFG-out conformation with inhibitor DSA-7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x G6I: N-{3-[(3-{4-[(4-METHOXYPHENYL)AMINO]-1,3,5-TRIAZIN-2-YL}PYRIDIN-2-YL)AMINO]-4-METHYLPHENYL}-3-(TRIFLUOROMETHYL)BENZAMIDE(Non-covalent)

G6I.1: 21 residues within 4Å: Chain A: V.35, A.48, K.50, E.66, I.69, L.70, I.78, V.79, I.93, I.95, E.96, F.97, C.98, G.101, H.140, L.149, L.158, A.159, D.160, F.161, K.166 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.35, A:A.48, A:K.50, A:E.66, A:I.69, A:L.70, A:V.79, A:I.93, A:I.95, A:F.97, A:F.161, A:K.166 Hydrogen bonds: A:E.66, A:C.98, A:C.98, A:D.160 G6I.4: 22 residues within 4Å: Chain B: L.27, V.35, A.48, K.50, E.66, L.70, I.78, V.79, I.93, I.95, E.96, F.97, C.98, G.101, L.133, H.140, L.149, L.158, A.159, D.160, F.161, K.166 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:L.27, B:V.35, B:A.48, B:E.66, B:L.70, B:V.79, B:I.93, B:I.95, B:F.97, B:K.166 Hydrogen bonds: B:E.66, B:E.66, B:C.98, B:C.98, B:D.160 Halogen bonds: B:L.158

5 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: E.298, E.301 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.301, H2O.9, H2O.10 CA.3: 1 residues within 4Å: Chain A: E.219 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.219, H2O.19, H2O.20, H2O.22, H2O.23 CA.5: 2 residues within 4Å: Chain B: E.298, E.301 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.301, H2O.63 CA.6: 1 residues within 4Å: Chain B: E.153 No protein-ligand interaction detected (PLIP) CA.7: 1 residues within 4Å: Chain B: E.219 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.219, H2O.67, H2O.68, H2O.70, H2O.71

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.8: 11 residues within 4Å: Chain A: E.187, M.190, C.191, K.262 Chain B: P.186, E.187, M.190, C.191, M.194, A.235, K.262 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.235, B:K.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ranjitkar, P. et al., Affinity-Based Probes Based on Type II Kinase Inhibitors. J.Am.Chem.Soc. (2012)

Release Date

2012-11-07

Peptides

Serine/threonine-protein kinase 10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase 10

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