SMTL ID : 2jb1.1

The L-amino acid oxidase from Rhodococcus opacus in complex with L- alanine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x ALA: ALANINE(Non-covalent)

ALA.1: 7 residues within 4Å: Chain A: R.83, Q.227, Y.370, W.425, A.465, W.466 Ligands: FAD.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.425 Hydrogen bonds: A:Q.227, A:Y.370, A:Y.370, A:A.465 Water bridges: A:T.82 Salt bridges: A:R.83 ALA.3: 7 residues within 4Å: Chain B: R.83, Q.227, Y.370, W.425, A.465, W.466 Ligands: FAD.4 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.425, B:A.465 Hydrogen bonds: B:Q.227, B:Y.370, B:A.465 Water bridges: B:T.82, B:R.83 Salt bridges: B:R.83

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 37 residues within 4Å: Chain A: G.18, G.19, G.20, P.21, A.22, L.40, E.41, A.42, R.43, G.47, G.48, R.49, V.50, V.79, G.80, A.81, T.82, R.83, A.258, E.259, V.260, T.291, I.292, P.293, S.320, Y.370, W.415, Y.420, A.424, W.425, G.457, D.458, A.465, W.466, Q.467, A.470 Ligands: ALA.1 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:R.49, A:Y.370, A:W.415, A:W.425 Hydrogen bonds: A:G.20, A:A.22, A:A.42, A:R.43, A:R.43, A:R.49, A:V.50, A:A.81, A:T.82, A:R.83, A:R.83, A:V.260, A:V.260, A:D.458, A:D.458, A:Q.467, A:Q.467 Water bridges: A:G.23, A:G.48, A:R.49, A:R.49, A:E.259, A:K.322, A:H.468 Salt bridges: A:R.49, A:R.49 pi-Stacking: A:Y.420, A:W.425, A:W.466 FAD.4: 37 residues within 4Å: Chain B: G.18, G.19, G.20, P.21, A.22, L.40, E.41, A.42, R.43, G.47, G.48, R.49, V.50, V.79, G.80, A.81, T.82, R.83, A.258, E.259, V.260, T.291, I.292, P.293, S.320, Y.370, W.415, Y.420, A.424, W.425, G.457, D.458, A.465, W.466, Q.467, A.470 Ligands: ALA.3 31 PLIP interactions: 31 interactions with chain B Hydrophobic interactions: B:R.49, B:Y.370, B:W.415, B:W.425 Hydrogen bonds: B:G.20, B:A.22, B:A.42, B:R.43, B:R.43, B:R.49, B:V.50, B:A.81, B:T.82, B:R.83, B:R.83, B:V.260, B:V.260, B:D.458, B:D.458, B:Q.467 Water bridges: B:G.23, B:G.48, B:R.49, B:K.322, B:H.459, B:H.468 Salt bridges: B:R.49, B:R.49 pi-Stacking: B:Y.420, B:W.425, B:W.466

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faust, A. et al., The Structure of a Bacterial L-Amino Acid Oxidase from Rhodococcus Opacus Gives New Evidence for the Hydride Mechanism for Dehydrogenation. J.Mol.Biol. (2007)

Release Date

2007-01-30

Peptides

L-AMINO ACID OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

L-AMINO ACID OXIDASE

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