SMTL ID : 2jb3.1

The structure of L-amino acid oxidase from Rhodococcus opacus in complex with o-aminobenzoate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: G.18, G.19, G.20, P.21, A.22, L.40, E.41, A.42, R.43, G.47, G.48, R.49, V.50, G.80, A.81, T.82, R.83, A.258, E.259, V.260, T.291, I.292, P.293, S.320, Y.370, W.415, Y.420, A.424, W.425, G.457, D.458, A.465, W.466, Q.467, A.470 Ligands: BE2.2 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.370, A:W.415, A:W.425 Hydrogen bonds: A:G.20, A:A.22, A:A.42, A:R.43, A:R.49, A:V.50, A:T.82, A:R.83, A:R.83, A:V.260, A:V.260, A:D.458, A:Q.467, A:Q.467 Water bridges: A:G.23, A:G.48, A:R.49, A:R.49, A:E.259, A:H.468 Salt bridges: A:R.49, A:R.49 pi-Stacking: A:Y.420, A:W.425, A:W.466 FAD.3: 35 residues within 4Å: Chain B: G.18, G.19, G.20, P.21, A.22, L.40, E.41, A.42, R.43, G.47, G.48, R.49, V.50, G.80, A.81, T.82, R.83, A.258, E.259, V.260, T.291, I.292, S.320, Y.370, W.415, Y.420, A.424, W.425, G.457, D.458, A.465, W.466, Q.467, A.470 Ligands: BE2.4 29 PLIP interactions: 29 interactions with chain B Hydrophobic interactions: B:Y.370, B:W.415, B:A.424 Hydrogen bonds: B:G.20, B:A.22, B:A.42, B:R.43, B:R.43, B:R.49, B:V.50, B:A.81, B:T.82, B:R.83, B:R.83, B:V.260, B:V.260, B:D.458, B:D.458, B:Q.467 Water bridges: B:G.23, B:G.48, B:R.49, B:T.291, B:H.459, B:H.468 Salt bridges: B:R.49, B:R.49 pi-Stacking: B:Y.420, B:W.425

2 x BE2: 2-AMINOBENZOIC ACID(Non-covalent)

BE2.2: 7 residues within 4Å: Chain A: R.83, Q.227, Y.370, W.425, A.465, W.466 Ligands: FAD.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.425, A:A.465 Hydrogen bonds: A:Q.227, A:Y.370, A:A.465 Water bridges: A:T.82 Salt bridges: A:R.83 BE2.4: 7 residues within 4Å: Chain B: R.83, Q.227, Y.370, W.425, A.465, W.466 Ligands: FAD.3 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.425, B:A.465 Hydrogen bonds: B:Q.227, B:W.466 Water bridges: B:T.82 Salt bridges: B:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faust, A. et al., The Structure of a Bacterial L-Amino Acid Oxidase from Rhodococcus Opacus Gives New Evidence for the Hydride Mechanism for Dehydrogenation. J.Mol.Biol. (2007)

Release Date

2007-01-30

Peptides

L-AMINO ACID OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

L-AMINO ACID OXIDASE

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