SMTL ID : 2jb5.1

Fab fragment in complex with small molecule hapten, crystal form-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x T5C: 2-{(1E,3Z,5E,7E)-7-[3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-1,3-DIHYDRO-2H-INDOL-2-YLIDENE]-4-METHYLHEPTA-1,3,5-TRIEN-1-YL}-3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-3H-INDOLIUM(Non-covalent)

T5C.1: 16 residues within 4Å: Chain A: Y.32, A.33, N.35, N.50, Y.99, M.101, K.104, L.106 Chain B: N.33, Y.34, V.35, S.36, Y.51, G.52, W.93, L.97 17 PLIP interactions: 9 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:Y.32, A:Y.99, A:Y.99, A:Y.99, A:L.106, B:L.97 Hydrogen bonds: A:A.33, A:N.35, A:N.50, B:G.52 Water bridges: A:E.52, B:S.36, B:S.36, B:S.36, B:L.97 pi-Stacking: B:W.93, B:W.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hillig, R.C. et al., Fab Mor03268 Triggers Absorption Shift of a Diagnostic Dye Via Packaging in a Solvent-Shielded Fab Dimer Interface. J.Mol.Biol. (2008)

Release Date

2008-01-08

Peptides

FAB FRAGMENT MOR03268 HEAVY CHAIN: A
FAB FRAGMENT MOR03268 LIGHT CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

FAB FRAGMENT MOR03268 HEAVY CHAIN

FAB FRAGMENT MOR03268 LIGHT CHAIN

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