SMTL ID : 2jfh.1

Crystal structure of MurD ligase in complex with L-Glu containing sulfonamide inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x LK1: N-[(6-BUTOXYNAPHTHALEN-2-YL)SULFONYL]-L-GLUTAMIC ACID(Non-covalent)

LK1.1: 13 residues within 4Å: Chain A: D.36, T.37, R.38, G.74, F.162, H.184, T.322, K.349, A.415, S.416, L.417, N.422, F.423 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.37, A:T.322, A:L.417, A:L.417 Hydrogen bonds: A:H.184, A:T.322, A:S.416, A:L.417, A:F.423 Water bridges: A:S.72 Salt bridges: A:H.184, A:K.349

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: N.114, G.115, K.116, S.117, T.118, R.303, K.320 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.115, A:S.117, A:T.118 Water bridges: A:N.114, A:K.116, A:K.116 Salt bridges: A:R.303, A:K.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kotnik, M. et al., Structural and Functional Characterization of Enantiomeric Glutamic Acid Derivatives as Potential Transition State Analogue Inhibitors of Murd Ligase. J.Mol.Biol. (2007)

Release Date

2007-05-15

Peptides

UDP-N-ACETYLMURAMOYL-ALANINE-D-GLUTAMATE LIGASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-ACETYLMURAMOYL-ALANINE-D-GLUTAMATE LIGASE

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