SMTL ID : 2uuo.1

Crystal structure of MurD ligase in complex with D-Glu containing sulfonamide inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: N.114, G.115, K.116, S.117, T.118, R.303, K.320 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.115, A:S.117, A:S.117, A:T.118 Water bridges: A:K.116, A:K.116 Salt bridges: A:R.303, A:K.320

1 x LK3: N-{[6-(PENTYLOXY)NAPHTHALEN-2-YL]SULFONYL}-D-GLUTAMIC ACID(Non-covalent)

LK3.2: 16 residues within 4Å: Chain A: I.12, G.13, D.36, T.37, R.38, S.72, G.74, F.162, H.184, T.322, K.349, A.415, S.416, L.417, N.422, F.423 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.12, A:A.415, A:L.417, A:L.417 Hydrogen bonds: A:S.416, A:L.417, A:F.423 Water bridges: A:D.183, A:H.184, A:T.322 Salt bridges: A:H.184, A:K.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Humljan, J. et al., Novel naphthalene-N-sulfonyl-D-glutamic acid derivatives as inhibitors of MurD, a key peptidoglycan biosynthesis enzyme. J. Med. Chem. (2008)

Release Date

2008-03-25

Peptides

UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE

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