SMTL ID : 2jjq.1

THE CRYSTAL STRUCTURE OF PYROCOCCUS ABYSSI TRNA (URACIL-54, C5)-METHYLTRANSFERASE IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 17 residues within 4Å: Chain A: F.270, Q.272, M.297, Y.298, S.299, G.300, T.303, F.304, D.319, S.320, N.321, A.344, S.345, D.346, D.360, P.361, P.362 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Q.272, A:Y.298, A:G.300, A:T.303, A:S.320, A:S.320, A:D.346, A:D.346, A:D.360, A:D.360 Water bridges: A:V.301, A:F.304, A:N.321 pi-Stacking: A:Y.298

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: I.111, L.112, G.113, A.393, K.397 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.393, A:K.397 Water bridges: A:I.111 GOL.3: 6 residues within 4Å: Chain A: K.179, I.180, S.181, F.191, G.215, N.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.181, A:N.216, A:N.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walbott, H. et al., The Crystal Structure of Pyrococcus Abyssi tRNA (Uracil-54, C5)-Methyltransferase Provides Insights Into its tRNA Specificity. Nucleic Acids Res. (2008)

Release Date

2008-08-05

Peptides

UNCHARACTERIZED RNA METHYLTRANSFERASE PYRAB10780: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UNCHARACTERIZED RNA METHYLTRANSFERASE PYRAB10780

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