SMTL ID : 2jlb.2 (1 other biounit)

Xanthomonas campestris putative OGT (XCC0866), complex with UDP- GlcNAc phosphonate analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x UDM: URIDINE-DIPHOSPHATE-METHYLENE-N-ACETYL-GLUCOSAMINE(Non-covalent)

UDM.1: 17 residues within 4Å: Chain A: P.219, T.220, L.222, L.223, L.313, A.314, N.385, K.388, L.412, P.440, K.441, L.442, H.444, Y.447, H.466, T.467, D.471 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.412 Hydrogen bonds: A:T.220, A:T.220, A:Q.354, A:N.385, A:N.385, A:N.385, A:K.388, A:L.442, A:L.442, A:H.444, A:Y.447, A:Y.447, A:T.467 Water bridges: A:T.468, A:T.468 Salt bridges: A:K.388 pi-Stacking: A:Y.447 pi-Cation interactions: A:K.441

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: H.264, H.277, H.281 Ligands: CL.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.264, A:H.277, H2O.3

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: H.264, H.277 Ligands: MN.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clarke, A.J. et al., Structural Insights Into Mechanism and Specificity of O-Glcnac Transferase. Embo J. (2008)

Release Date

2008-11-25

Peptides

XCC0866: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

XCC0866

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