SMTL ID : 2kgi.1

Solution structure of JARID1A C-terminal PHD finger in complex with H3(1-9)K4me3

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- M3L- GLN- THR- ALA- ARG- LYS: H3(1-9)K4me3(Non-covalent)

ALA-ARG-THR-M3L-GLN-THR-ALA-ARG-LYS.1: 19 residues within 4Å: Chain A: C.12, K.13, D.14, K.15, V.16, D.17, W.18, V.19, Q.20, C.21, D.22, D.26, W.28, Q.31, A.41, E.42, E.44, D.45, Y.46 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:K.15, A:K.15, A:W.18, A:W.18, A:Q.20, A:W.28, A:Y.46 Hydrogen bonds: A:D.14, A:V.16, A:V.16, A:D.17, A:W.18, A:W.18, A:W.18, A:Q.20, A:C.21, A:D.22, A:E.44 Salt bridges: A:D.22, A:D.26 pi-Cation interactions: A:W.18, A:W.18, A:W.28, A:W.28

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: C.21, C.25, F.29, C.48, N.50, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.25, A:C.48, A:C.51 ZN.3: 7 residues within 4Å: Chain A: C.3, A.5, C.8, Q.9, F.29, H.30, C.33 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.3, A:C.8, A:H.30, A:C.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, G.G. et al., Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger. Nature (2009)

Release Date

2009-05-05

Peptides

Histone demethylase JARID1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone demethylase JARID1A

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