SMTL ID : 2kwo.1

Solution structure of the double PHD (plant homeodomain) fingers of human transcriptional protein DPF3b bound to a histone H4 peptide containing N-terminal acetylation at Serine 1

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

hetero-oligomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain B: C.4, F.6, C.7, N.14, H.34, C.37 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.4, B:C.7, B:H.34, B:C.37 ZN.2: 5 residues within 4Å: Chain B: C.26, D.28, C.29, C.55, C.58 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.26, B:C.29, B:C.55, B:C.58 ZN.3: 7 residues within 4Å: Chain B: C.76, D.78, C.79, D.80, R.81, C.102, C.105 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.76, B:C.79, B:C.102, B:C.105 ZN.4: 6 residues within 4Å: Chain B: C.61, L.63, C.64, L.73, H.84, C.87 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.61, B:C.64, B:H.84, B:C.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeng, L. et al., Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b. Nature (2010)

Release Date

2010-07-14

Peptides

Histone peptide: A
Zinc finger protein DPF3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Histone peptide

Zinc finger protein DPF3

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