SMTL ID : 5fa5.1 (3 other biounits)

Crystal Structure of PRMT5:MEP50 in complex with MTA and H4 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

hetero-4-4-4-mer

Ligands

4 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)

MTA.1: 17 residues within 4Å: Chain A: P.327, L.328, Y.337, F.340, G.378, G.380, E.405, K.406, N.407, S.431, D.432, M.433, R.434, E.448, L.449, C.462 Chain C: R.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.337, A:Y.337, A:G.380, A:K.406, A:D.432, A:M.433 Water bridges: A:N.407 pi-Cation interactions: A:K.406 MTA.2: 17 residues within 4Å: Chain D: P.327, L.328, Y.337, F.340, G.378, G.380, E.405, K.406, N.407, S.431, D.432, M.433, R.434, E.448, L.449, C.462 Chain F: R.3 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:Y.337, D:Y.337, D:G.380, D:K.406, D:D.432, D:M.433 Water bridges: D:N.407 pi-Cation interactions: D:K.406 MTA.3: 17 residues within 4Å: Chain G: P.327, L.328, Y.337, F.340, G.378, G.380, E.405, K.406, N.407, S.431, D.432, M.433, R.434, E.448, L.449, C.462 Chain I: R.3 7 PLIP interactions: 7 interactions with chain G Hydrogen bonds: G:Y.337, G:G.380, G:K.406, G:D.432, G:M.433 Water bridges: G:N.407 pi-Cation interactions: G:K.406 MTA.4: 17 residues within 4Å: Chain J: P.327, L.328, Y.337, F.340, G.378, G.380, E.405, K.406, N.407, S.431, D.432, M.433, R.434, E.448, L.449, C.462 Chain L: R.3 7 PLIP interactions: 7 interactions with chain J Hydrogen bonds: J:Y.337, J:G.380, J:K.406, J:D.432, J:M.433 Water bridges: J:N.407 pi-Cation interactions: J:K.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mavrakis, K.J. et al., Disordered methionine metabolism in MTAP/CDKN2A-deleted cancers leads to dependence on PRMT5. Science (2016)

Release Date

2016-02-24

Peptides

Protein arginine N-methyltransferase 5: ADGJ
Methylosome protein 50: BEHK
Histone H4: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

B
B

E
B

H
B

K
B

C
C

F
C

I
C

L
C

Protein arginine N-methyltransferase 5

Methylosome protein 50

Histone H4

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