SMTL ID : 2kzm.1

KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC AND MANGANESE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x DC- DG- DC: DNA (5'-D(*GP*CP*TP*TP*A*CP*GP*C)-3')(Non-covalent)

DC-DG-DC.1: 16 residues within 4Å: Chain A: D.32, T.33, E.34, T.35, L.38, Q.96, N.97, Y.100, D.134, M.135, F.150, F.163, Y.174, D.178 Ligands: MN.2, ZN.3 Protein-ligand interaction information (PLIP) not available

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: D.32 Ligands: DC-DG-DC.1, DC-DG-DC.1, ZN.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.32

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 6 residues within 4Å: Chain A: D.32, E.34, Y.174, D.178 Ligands: DC-DG-DC.1, MN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.32, A:E.34, A:D.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brautigam, C.A. et al., Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli. Biochemistry (1999)

Release Date

1999-02-16

Peptides

PROTEIN (DNA POLYMERASE I): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (DNA POLYMERASE I)

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