SMTL ID : 2nlc.5 (6 other biounits)

Human beta-defensin-1 (mutant Ser8Ala)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-tetramer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: N.4 Chain B: D.1, G.25, T.26 Chain C: R.29 7 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: B:D.1, B:T.26, B:T.26, A:N.4 Water bridges: B:N.4, B:N.4 Salt bridges: C:R.29 SO4.2: 6 residues within 4Å: Chain A: D.1, H.2, C.27, Y.28, R.29 Chain C: Y.3 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:D.1, A:H.2, A:Y.28, A:R.29 Water bridges: A:D.1, A:D.1, A:R.29, A:R.29, A:R.29, A:G.30, C:Y.3 Salt bridges: A:R.29 SO4.3: 6 residues within 4Å: Chain B: D.1, H.2, C.27, Y.28, R.29 Chain D: Y.3 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:H.2, B:Y.28, B:R.29 Water bridges: B:D.1, B:D.1, B:R.29, B:G.30, B:G.30, B:G.30, B:G.30, D:Y.3 Salt bridges: B:R.29 SO4.4: 6 residues within 4Å: Chain A: Y.3 Chain C: D.1, H.2, C.27, Y.28, R.29 12 PLIP interactions: 2 interactions with chain B, 9 interactions with chain C, 1 interactions with chain A Water bridges: B:N.4, B:N.4, C:H.2, C:Y.3, C:C.27, C:R.29, C:G.30, A:Y.3 Hydrogen bonds: C:H.2, C:Y.28, C:R.29 Salt bridges: C:R.29 SO4.5: 4 residues within 4Å: Chain C: D.1, G.25, T.26 Chain D: R.29 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:D.1, C:T.26, C:T.26 Water bridges: C:N.4, C:N.4, C:N.4, C:T.26, C:T.26 SO4.6: 6 residues within 4Å: Chain B: Y.3 Chain D: D.1, H.2, C.27, Y.28, R.29 9 PLIP interactions: 7 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:H.2, D:Y.28, D:R.29 Water bridges: D:T.26, D:R.29, D:G.30, B:D.1, B:Y.3 Salt bridges: D:R.29

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 3 residues within 4Å: Chain D: D.1, G.25, T.26 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:T.26 Water bridges: D:D.1, D:D.1, D:N.4, D:T.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pazgier, M. et al., Studies of the Biological Properties of Human beta-Defensin 1. J.Biol.Chem. (2007)

Release Date

2006-10-31

Peptides

Beta-defensin 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

C
B

D
C

Beta-defensin 1

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