SMTL ID : 2nlc.7 (6 other biounits)

Human beta-defensin-1 (mutant Ser8Ala)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: D.1, H.2, C.27, Y.28, R.29 Chain B: Y.3 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:H.2, A:Y.28, A:R.29 Water bridges: A:H.2, A:Y.3, A:C.27, A:R.29, A:G.30, B:Y.3 Salt bridges: A:R.29 SO4.2: 3 residues within 4Å: Chain A: D.1, G.25, T.26 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.1, A:T.26, A:T.26 Water bridges: A:N.4, A:N.4, A:N.4, A:T.26, A:T.26 SO4.3: 2 residues within 4Å: Chain A: R.29 Chain B: N.4 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.29 Hydrogen bonds: B:N.4 SO4.4: 6 residues within 4Å: Chain A: Y.3 Chain B: D.1, H.2, C.27, Y.28, R.29 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.1, B:H.2, B:Y.28, B:R.29 Water bridges: B:D.1, B:D.1, B:R.29, B:R.29, B:R.29, B:G.30, A:Y.3 Salt bridges: B:R.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pazgier, M. et al., Studies of the Biological Properties of Human beta-Defensin 1. J.Biol.Chem. (2007)

Release Date

2006-10-31

Peptides

Beta-defensin 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Beta-defensin 1

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