SMTL ID : 2nnh.2 (2 other biounits)

CYP2C8dH complexed with 2 molecules of 9-cis retinoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.114, N.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.115 Salt bridges: A:R.114

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 26 residues within 4Å: Chain A: R.79, I.94, I.95, W.102, R.106, L.113, L.276, A.279, G.280, T.283, T.284, T.287, Q.338, L.343, V.348, H.350, P.409, F.410, S.411, R.415, C.417, A.418, G.419, A.423, E.426 Ligands: 9CR.3 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:I.94, A:L.113, A:L.276, A:L.343, A:V.348, A:F.410, A:F.410, A:A.418 Hydrogen bonds: A:S.411 Water bridges: A:V.348 Salt bridges: A:R.79, A:R.79, A:R.106, A:H.350, A:R.415 Metal complexes: A:C.417

2 x 9CR: (9cis)-retinoic acid(Non-covalent)

9CR.3: 13 residues within 4Å: Chain A: R.79, G.80, N.81, S.82, I.95, V.278, T.283, V.348, P.349, I.458, V.459 Ligands: HEM.2, 9CR.4 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.79, A:I.95, A:T.283, A:V.348, A:V.348, A:P.349, A:I.458 Hydrogen bonds: A:G.80, A:N.81, A:S.82, A:P.349 9CR.4: 13 residues within 4Å: Chain A: S.82, I.84, I.88, F.183, N.186, F.187, L.190, N.191, N.199, R.223, V.278, I.458 Ligands: 9CR.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.84, A:I.88, A:N.186, A:F.187, A:L.190, A:L.190, A:N.191, A:V.278, A:V.278, A:I.458 Hydrogen bonds: A:N.186 Salt bridges: A:R.223

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.5: 4 residues within 4Å: Chain A: F.208, P.209, G.210, T.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.210, A:T.211, A:T.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schoch, G.A. et al., Determinants of cytochrome P450 2C8 substrate binding: structures of complexes with montelukast, troglitazone, felodipine, and 9-cis-retinoic acid. J.Biol.Chem. (2008)

Release Date

2007-10-23

Peptides

Cytochrome P450 2C8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cytochrome P450 2C8

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