SMTL ID : 2nvb.1 (2 other biounits)

Contribution of Pro275 to the Thermostability of the Alcohol Dehydrogenases (ADHs)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.37, S.39, H.59, D.150 Ligands: NAP.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.37, A:H.59, A:D.150 ZN.3: 5 residues within 4Å: Chain B: C.37, S.39, H.59, D.150 Ligands: NAP.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.37, B:H.59, B:D.150 ZN.5: 5 residues within 4Å: Chain C: C.37, S.39, H.59, D.150 Ligands: NAP.6 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.37, C:H.59, C:D.150 ZN.7: 4 residues within 4Å: Chain D: C.37, S.39, D.150 Ligands: NAP.8 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.37, D:D.150

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 24 residues within 4Å: Chain A: T.38, S.39, W.110, D.150, T.154, G.174, I.175, G.176, P.177, V.178, V.197, G.198, S.199, R.200, Y.218, A.242, G.243, G.244, V.265, N.266, Y.267, K.340 Chain B: M.285 Ligands: ZN.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.38, A:S.39, A:I.175, A:G.176, A:V.178, A:G.179, A:S.199, A:S.199, A:R.200, A:R.200, A:Y.218, A:N.266, A:Y.267 Salt bridges: A:R.200, A:K.340 pi-Stacking: A:Y.218, A:Y.218 NAP.4: 30 residues within 4Å: Chain A: M.285 Chain B: T.38, S.39, H.42, W.110, D.150, M.151, T.154, G.174, I.175, G.176, P.177, V.178, G.179, V.197, G.198, S.199, R.200, Y.218, K.219, A.242, G.243, G.244, N.245, V.265, N.266, Y.267, L.294, K.340 Ligands: ZN.3 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:T.154, B:V.178 Hydrogen bonds: B:S.39, B:H.42, B:I.175, B:V.178, B:G.179, B:S.199, B:S.199, B:R.200, B:R.200, B:Y.218, B:Y.218, B:A.242, B:N.245, B:N.245, B:Y.267 Salt bridges: B:R.200, B:K.219, B:K.340 pi-Stacking: B:Y.218 NAP.6: 24 residues within 4Å: Chain C: T.38, S.39, H.42, W.110, D.150, T.154, G.174, I.175, G.176, P.177, V.178, V.197, G.198, S.199, R.200, Y.218, A.242, V.265, N.266, Y.267, L.294, K.340 Chain D: M.285 Ligands: ZN.5 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:T.154, C:V.178 Hydrogen bonds: C:T.38, C:T.38, C:T.38, C:T.38, C:S.39, C:S.39, C:H.42, C:I.175, C:S.199, C:S.199, C:R.200, C:N.245, C:Y.267 Salt bridges: C:R.200, C:K.340, C:K.340 pi-Stacking: C:Y.218 NAP.8: 27 residues within 4Å: Chain C: M.285 Chain D: T.38, S.39, H.42, W.110, D.150, T.154, G.174, I.175, G.176, P.177, V.178, V.197, G.198, S.199, R.200, Y.218, A.242, G.243, G.244, N.245, I.248, V.265, N.266, Y.267, L.294 Ligands: ZN.7 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:T.154 Hydrogen bonds: D:T.38, D:T.38, D:S.39, D:H.42, D:I.175, D:V.178, D:S.199, D:R.200, D:Y.218, D:Y.218, D:N.245, D:Y.267 Salt bridges: D:R.200, D:K.340, D:K.340 pi-Stacking: D:Y.218, D:Y.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goihberg, E. et al., Thermal stabilization of the protozoan Entamoeba histolytica alcohol dehydrogenase by a single proline substitution. Proteins (2008)

Release Date

2007-11-13

Peptides

NADP-dependent alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NADP-dependent alcohol dehydrogenase

Related Entries With Identical Sequence