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SMTL ID : 2nvb.3
(2 other biounits)
Contribution of Pro275 to the Thermostability of the Alcohol Dehydrogenases (ADHs)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.80 Å
Oligo State
homo-dimer
Ligands
2 x
ZN
:
ZINC ION
(Non-covalent)
ZN.1:
5 residues within 4Å:
Chain A:
C.37
,
S.39
,
H.59
,
D.150
Ligands:
NAP.2
3
PLIP interactions
:
3 interactions with chain A
Metal complexes:
A:C.37
,
A:H.59
,
A:D.150
ZN.3:
4 residues within 4Å:
Chain B:
C.37
,
S.39
,
D.150
Ligands:
NAP.4
2
PLIP interactions
:
2 interactions with chain B
Metal complexes:
B:C.37
,
B:D.150
2 x
NAP
:
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
(Non-covalent)
NAP.2:
24 residues within 4Å:
Chain A:
T.38
,
S.39
,
H.42
,
W.110
,
D.150
,
T.154
,
G.174
,
I.175
,
G.176
,
P.177
,
V.178
,
V.197
,
G.198
,
S.199
,
R.200
,
Y.218
,
A.242
,
V.265
,
N.266
,
Y.267
,
L.294
,
K.340
Chain B:
M.285
Ligands:
ZN.1
19
PLIP interactions
:
19 interactions with chain A
Hydrophobic interactions:
A:T.154
,
A:V.178
Hydrogen bonds:
A:T.38
,
A:T.38
,
A:T.38
,
A:T.38
,
A:S.39
,
A:S.39
,
A:H.42
,
A:I.175
,
A:S.199
,
A:S.199
,
A:R.200
,
A:N.245
,
A:Y.267
Salt bridges:
A:R.200
,
A:K.340
,
A:K.340
pi-Stacking:
A:Y.218
NAP.4:
27 residues within 4Å:
Chain A:
M.285
Chain B:
T.38
,
S.39
,
H.42
,
W.110
,
D.150
,
T.154
,
G.174
,
I.175
,
G.176
,
P.177
,
V.178
,
V.197
,
G.198
,
S.199
,
R.200
,
Y.218
,
A.242
,
G.243
,
G.244
,
N.245
,
I.248
,
V.265
,
N.266
,
Y.267
,
L.294
Ligands:
ZN.3
18
PLIP interactions
:
18 interactions with chain B
Hydrophobic interactions:
B:T.154
Hydrogen bonds:
B:T.38
,
B:T.38
,
B:S.39
,
B:H.42
,
B:I.175
,
B:V.178
,
B:S.199
,
B:R.200
,
B:Y.218
,
B:Y.218
,
B:N.245
,
B:Y.267
Salt bridges:
B:R.200
,
B:K.340
,
B:K.340
pi-Stacking:
B:Y.218
,
B:Y.218
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Goihberg, E. et al., Thermal stabilization of the protozoan Entamoeba histolytica alcohol dehydrogenase by a single proline substitution. Proteins (2008)
Release Date
2007-11-13
Peptides
NADP-dependent alcohol dehydrogenase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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NADP-dependent alcohol dehydrogenase
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