SMTL ID : 2nxl.1

Structure of HIV-1 protease D25N complexed with the rt-rh analogue peptide GLY-ALA-GLU-VAL-PHE*TYR-VAL-ASP-GLY-ALA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-1-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain B: G.16, G.17 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.16 PO4.2: 1 residues within 4Å: Chain B: P.1 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.1 Water bridges: A:F.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Altman, M.D. et al., Computational design and experimental study of tighter binding peptides to an inactivated mutant of HIV-1 protease. Proteins (2007)

Release Date

2007-09-18

Peptides

PROTEASE RETROPEPSIN: AB
Analogue of RT-RH pol protease substrate peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
P

PROTEASE RETROPEPSIN

Analogue of RT-RH pol protease substrate peptide

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