SMTL ID : 2o1o.1

Cryptosporidium parvum putative polyprenyl pyrophosphate synthase (cgd4_2550) in complex with risedronate.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

homo-dimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: N.254, D.258, D.268 Ligands: RIS.4 No protein-ligand interaction detected (PLIP) MG.2: 6 residues within 4Å: Chain A: D.115, D.119, Q.184, D.187 Ligands: MG.3, RIS.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.115, A:D.119 MG.3: 4 residues within 4Å: Chain A: D.115, D.119 Ligands: MG.2, RIS.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.115, A:D.119, H2O.1, H2O.1 MG.5: 2 residues within 4Å: Chain B: N.254 Ligands: RIS.8 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain B: D.115, D.119 Ligands: RIS.8 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.115, B:D.119, H2O.1, H2O.2 MG.7: 5 residues within 4Å: Chain B: D.115, D.119, D.187, K.273 Ligands: RIS.8 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.119, B:D.187, H2O.2

2 x RIS: 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID(Non-covalent)

RIS.4: 13 residues within 4Å: Chain A: L.112, D.115, D.119, R.124, Q.184, K.210, T.211, Y.214, Q.251, N.254 Ligands: MG.1, MG.2, MG.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:D.115 Hydrogen bonds: A:R.124, A:R.124, A:Q.251, A:N.254, A:N.254 Water bridges: A:D.268, A:R.271 pi-Cation interactions: A:K.210 RIS.8: 14 residues within 4Å: Chain B: L.112, D.115, D.119, R.124, Q.184, K.210, T.211, Y.214, Q.251, N.254, K.273 Ligands: MG.5, MG.6, MG.7 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.112, B:D.115 Hydrogen bonds: B:R.124, B:R.124, B:Q.251, B:N.254, B:K.273 Water bridges: B:D.115, B:R.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Artz, J.D. et al., Targeting a uniquely nonspecific prenyl synthase with bisphosphonates to combat cryptosporidiosis. Chem.Biol. (2008)

Release Date

2006-12-12

Peptides

Putative farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative farnesyl pyrophosphate synthase

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