SMTL ID : 2q58.1

Cryptosporidium parvum putative polyprenyl pyrophosphate synthase (cgd4_2550) in complex with zoledronate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

homo-dimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.115, D.119, R.124 Ligands: MG.2, ZOL.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.115, A:D.119, H2O.1 MG.2: 4 residues within 4Å: Chain A: D.115, D.119 Ligands: MG.1, ZOL.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.115, A:D.119, H2O.1 MG.3: 2 residues within 4Å: Chain A: N.254 Ligands: ZOL.4 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain B: D.115, D.119 Ligands: ZOL.8 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.115, B:D.119, H2O.1, H2O.1 MG.6: 5 residues within 4Å: Chain B: D.115, D.119, D.187, K.273 Ligands: ZOL.8 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.119, B:D.187, H2O.1 MG.7: 4 residues within 4Å: Chain B: Q.251, N.254, D.255 Ligands: ZOL.8 No protein-ligand interaction detected (PLIP)

2 x ZOL: ZOLEDRONIC ACID(Non-covalent)

ZOL.4: 13 residues within 4Å: Chain A: L.112, D.115, D.119, R.124, Q.184, K.210, T.211, Q.251, N.254, D.255 Ligands: MG.1, MG.2, MG.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.124, A:R.124, A:Y.214, A:Q.251, A:Q.251, A:N.254, A:N.254 pi-Cation interactions: A:K.210 ZOL.8: 12 residues within 4Å: Chain B: D.115, D.119, R.124, Q.184, K.210, T.211, Q.251, N.254, K.273 Ligands: MG.5, MG.6, MG.7 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:R.124, B:R.124, B:Q.251, B:Q.251, B:N.254, B:N.254, B:K.273 Water bridges: B:D.116, B:D.116, B:R.271, B:R.271 pi-Cation interactions: B:K.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Artz, J.D. et al., Targeting a uniquely nonspecific prenyl synthase with bisphosphonates to combat cryptosporidiosis. Chem.Biol. (2008)

Release Date

2007-06-12

Peptides

Farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Farnesyl pyrophosphate synthase

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