SMTL ID : 2o72.1

Crystal Structure Analysis of human E-cadherin (1-213)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

10 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.102, N.104, D.134, D.136, N.143, D.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.104, A:D.134, A:D.136, A:N.143, A:D.195 CA.2: 7 residues within 4Å: Chain A: E.11, E.69, D.100, Q.101, D.103, N.104, D.136 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:D.100, A:Q.101, A:D.103, A:D.136 CA.3: 4 residues within 4Å: Chain A: E.11, D.67, E.69, D.103 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.11, A:D.67, A:E.69, A:D.103, H2O.1, H2O.3 CA.4: 3 residues within 4Å: Chain A: E.119, D.180 Ligands: CA.5 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.119, A:D.180, H2O.9, H2O.9 CA.5: 5 residues within 4Å: Chain A: E.119, R.181, E.182, D.213 Ligands: CA.4 No protein-ligand interaction detected (PLIP) CA.6: 6 residues within 4Å: Chain B: N.102, N.104, D.134, D.136, N.143, D.195 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.104, B:D.134, B:D.136, B:N.143, B:D.195 CA.7: 7 residues within 4Å: Chain B: E.11, E.69, D.100, Q.101, D.103, N.104, D.136 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:D.100, B:Q.101, B:D.103, B:D.136 CA.8: 4 residues within 4Å: Chain B: E.11, D.67, E.69, D.103 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.11, B:D.67, B:E.69, B:D.103, H2O.11, H2O.13 CA.9: 3 residues within 4Å: Chain B: E.119, D.180 Ligands: CA.10 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.119, B:D.180, H2O.18, H2O.19 CA.10: 5 residues within 4Å: Chain B: E.119, R.181, E.182, D.213 Ligands: CA.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parisini, E. et al., The Crystal Structure of Human E-cadherin Domains 1 and 2, and Comparison with other Cadherins in the Context of Adhesion Mechanism. J.Mol.Biol. (2007)

Release Date

2007-10-09

Peptides

Epithelial-cadherin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Epithelial-cadherin

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