SMTL ID : 8h62.1

Crystal structure of Internalin A from Listeria monocytogenes with human E-cadherin EC12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

hetero-1-1-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: L.376, T.449, T.450 Chain B: D.1 6 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:D.1, A:L.376, A:T.449, H2O.2, H2O.7, H2O.14 CA.2: 6 residues within 4Å: Chain B: N.102, N.104, D.134, D.136, N.143, D.195 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.104, B:D.134, B:D.136, B:N.143, B:D.195 CA.3: 8 residues within 4Å: Chain B: E.11, E.69, D.100, Q.101, D.103, N.104, D.136 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:D.100, B:Q.101, B:D.103, B:D.136 CA.4: 5 residues within 4Å: Chain B: E.11, D.67, E.69, D.103 Ligands: CA.3 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.11, B:D.67, B:E.69, B:D.103, H2O.19, H2O.22

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 2 residues within 4Å: Chain B: A.43, G.49 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamazaki, T. et al., Anti-InlA single-domain antibodies that inhibit the cell invasion of Listeria monocytogenes. J.Biol.Chem. (2023)

Release Date

2023-10-04

Peptides

Internalin A: A
Cadherin-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Internalin A

Cadherin-1

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