SMTL ID : 2o8x.2 (2 other biounits)

Crystal structure of the "-35 element" promoter recognition domain of Mycobacterium tuberculosis SigC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-36-mer

Ligands

108 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.17, T.18 Ligand excluded by PLIP SO4.2: 2 residues within 4Å: Chain A: Y.34, R.56 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: T.47, S.50, R.51 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: L.25, L.26, L.30 Chain B: V.9, L.59 Ligand excluded by PLIP SO4.5: 5 residues within 4Å: Chain B: L.25, L.26, L.29, L.30 Chain C: V.9 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain B: T.17, D.19, Q.20, R.54 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain B: T.17, T.18 Ligand excluded by PLIP SO4.8: 7 residues within 4Å: Chain A: V.9, L.59, L.60 Chain C: L.25, L.26, L.29, L.30 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain C: T.17, D.19, Q.20, R.51, R.54 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain D: T.17, T.18 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain D: Y.34, R.56 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain D: T.47, S.50, R.51 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain D: L.25, L.26, L.30 Chain E: V.9, L.59 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain E: L.25, L.26, L.29, L.30 Chain F: V.9 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain E: T.17, D.19, Q.20, R.54 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain E: T.17, T.18 Ligand excluded by PLIP SO4.17: 7 residues within 4Å: Chain D: V.9, L.59, L.60 Chain F: L.25, L.26, L.29, L.30 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain F: T.17, D.19, Q.20, R.51, R.54 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain G: T.17, T.18 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain G: Y.34, R.56 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain G: T.47, S.50, R.51 Ligand excluded by PLIP SO4.22: 5 residues within 4Å: Chain G: L.25, L.26, L.30 Chain H: V.9, L.59 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain H: L.25, L.26, L.29, L.30 Chain I: V.9 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain H: T.17, D.19, Q.20, R.54 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain H: T.17, T.18 Ligand excluded by PLIP SO4.26: 7 residues within 4Å: Chain G: V.9, L.59, L.60 Chain I: L.25, L.26, L.29, L.30 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain I: T.17, D.19, Q.20, R.51, R.54 Ligand excluded by PLIP SO4.28: 2 residues within 4Å: Chain J: T.17, T.18 Ligand excluded by PLIP SO4.29: 2 residues within 4Å: Chain J: Y.34, R.56 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain J: T.47, S.50, R.51 Ligand excluded by PLIP SO4.31: 5 residues within 4Å: Chain J: L.25, L.26, L.30 Chain K: V.9, L.59 Ligand excluded by PLIP SO4.32: 5 residues within 4Å: Chain K: L.25, L.26, L.29, L.30 Chain L: V.9 Ligand excluded by PLIP SO4.33: 4 residues within 4Å: Chain K: T.17, D.19, Q.20, R.54 Ligand excluded by PLIP SO4.34: 2 residues within 4Å: Chain K: T.17, T.18 Ligand excluded by PLIP SO4.35: 7 residues within 4Å: Chain J: V.9, L.59, L.60 Chain L: L.25, L.26, L.29, L.30 Ligand excluded by PLIP SO4.36: 5 residues within 4Å: Chain L: T.17, D.19, Q.20, R.51, R.54 Ligand excluded by PLIP SO4.37: 2 residues within 4Å: Chain M: T.17, T.18 Ligand excluded by PLIP SO4.38: 2 residues within 4Å: Chain M: Y.34, R.56 Ligand excluded by PLIP SO4.39: 3 residues within 4Å: Chain M: T.47, S.50, R.51 Ligand excluded by PLIP SO4.40: 5 residues within 4Å: Chain M: L.25, L.26, L.30 Chain N: V.9, L.59 Ligand excluded by PLIP SO4.41: 5 residues within 4Å: Chain N: L.25, L.26, L.29, L.30 Chain O: V.9 Ligand excluded by PLIP SO4.42: 4 residues within 4Å: Chain N: T.17, D.19, Q.20, R.54 Ligand excluded by PLIP SO4.43: 2 residues within 4Å: Chain N: T.17, T.18 Ligand excluded by PLIP SO4.44: 7 residues within 4Å: Chain M: V.9, L.59, L.60 Chain O: L.25, L.26, L.29, L.30 Ligand excluded by PLIP SO4.45: 5 residues within 4Å: Chain O: T.17, D.19, Q.20, R.51, R.54 Ligand excluded by PLIP SO4.46: 2 residues within 4Å: Chain P: T.17, T.18 Ligand excluded by PLIP SO4.47: 2 residues within 4Å: Chain P: Y.34, R.56 Ligand excluded by PLIP SO4.48: 3 residues within 4Å: Chain P: T.47, S.50, R.51 Ligand excluded by PLIP SO4.49: 5 residues within 4Å: Chain P: L.25, L.26, L.30 Chain Q: V.9, L.59 Ligand excluded by PLIP SO4.50: 5 residues within 4Å: Chain Q: L.25, L.26, L.29, L.30 Chain R: V.9 Ligand excluded by PLIP SO4.51: 4 residues within 4Å: Chain Q: T.17, D.19, Q.20, R.54 Ligand excluded by PLIP SO4.52: 2 residues within 4Å: Chain Q: T.17, T.18 Ligand excluded by PLIP SO4.53: 7 residues within 4Å: Chain P: V.9, L.59, L.60 Chain R: L.25, L.26, L.29, L.30 Ligand excluded by PLIP SO4.54: 5 residues within 4Å: Chain R: T.17, D.19, Q.20, R.51, R.54 Ligand excluded by PLIP SO4.55: 2 residues within 4Å: Chain S: T.17, T.18 Ligand excluded by PLIP SO4.56: 2 residues within 4Å: Chain S: Y.34, R.56 Ligand excluded by PLIP SO4.57: 3 residues within 4Å: Chain S: T.47, S.50, R.51 Ligand excluded by PLIP SO4.58: 5 residues within 4Å: Chain S: L.25, L.26, L.30 Chain T: V.9, L.59 Ligand excluded by PLIP SO4.59: 5 residues within 4Å: Chain T: L.25, L.26, L.29, L.30 Chain U: V.9 Ligand excluded by PLIP SO4.60: 4 residues within 4Å: Chain T: T.17, D.19, Q.20, R.54 Ligand excluded by PLIP SO4.61: 2 residues within 4Å: Chain T: T.17, T.18 Ligand excluded by PLIP SO4.62: 7 residues within 4Å: Chain S: V.9, L.59, L.60 Chain U: L.25, L.26, L.29, L.30 Ligand excluded by PLIP SO4.63: 5 residues within 4Å: Chain U: T.17, D.19, Q.20, R.51, R.54 Ligand excluded by PLIP SO4.64: 2 residues within 4Å: Chain V: T.17, T.18 Ligand excluded by PLIP SO4.65: 2 residues within 4Å: Chain V: Y.34, R.56 Ligand excluded by PLIP SO4.66: 3 residues within 4Å: Chain V: T.47, S.50, R.51 Ligand excluded by PLIP SO4.67: 5 residues within 4Å: Chain V: L.25, L.26, L.30 Chain W: V.9, L.59 Ligand excluded by PLIP SO4.68: 5 residues within 4Å: Chain W: L.25, L.26, L.29, L.30 Chain X: V.9 Ligand excluded by PLIP SO4.69: 4 residues within 4Å: Chain W: T.17, D.19, Q.20, R.54 Ligand excluded by PLIP SO4.70: 2 residues within 4Å: Chain W: T.17, T.18 Ligand excluded by PLIP SO4.71: 7 residues within 4Å: Chain V: V.9, L.59, L.60 Chain X: L.25, L.26, L.29, L.30 Ligand excluded by PLIP SO4.72: 5 residues within 4Å: Chain X: T.17, D.19, Q.20, R.51, R.54 Ligand excluded by PLIP SO4.73: 2 residues within 4Å: Chain Y: T.17, T.18 Ligand excluded by PLIP SO4.74: 2 residues within 4Å: Chain Y: Y.34, R.56 Ligand excluded by PLIP SO4.75: 3 residues within 4Å: Chain Y: T.47, S.50, R.51 Ligand excluded by PLIP SO4.76: 5 residues within 4Å: Chain Y: L.25, L.26, L.30 Chain Z: V.9, L.59 Ligand excluded by PLIP SO4.77: 5 residues within 4Å: Chain 0: V.9 Chain Z: L.25, L.26, L.29, L.30 Ligand excluded by PLIP SO4.78: 4 residues within 4Å: Chain Z: T.17, D.19, Q.20, R.54 Ligand excluded by PLIP SO4.79: 2 residues within 4Å: Chain Z: T.17, T.18 Ligand excluded by PLIP SO4.80: 7 residues within 4Å: Chain 0: L.25, L.26, L.29, L.30 Chain Y: V.9, L.59, L.60 Ligand excluded by PLIP SO4.81: 5 residues within 4Å: Chain 0: T.17, D.19, Q.20, R.51, R.54 Ligand excluded by PLIP SO4.82: 2 residues within 4Å: Chain 1: T.17, T.18 Ligand excluded by PLIP SO4.83: 2 residues within 4Å: Chain 1: Y.34, R.56 Ligand excluded by PLIP SO4.84: 3 residues within 4Å: Chain 1: T.47, S.50, R.51 Ligand excluded by PLIP SO4.85: 5 residues within 4Å: Chain 1: L.25, L.26, L.30 Chain 2: V.9, L.59 Ligand excluded by PLIP SO4.86: 5 residues within 4Å: Chain 2: L.25, L.26, L.29, L.30 Chain 3: V.9 Ligand excluded by PLIP SO4.87: 4 residues within 4Å: Chain 2: T.17, D.19, Q.20, R.54 Ligand excluded by PLIP SO4.88: 2 residues within 4Å: Chain 2: T.17, T.18 Ligand excluded by PLIP SO4.89: 7 residues within 4Å: Chain 1: V.9, L.59, L.60 Chain 3: L.25, L.26, L.29, L.30 Ligand excluded by PLIP SO4.90: 5 residues within 4Å: Chain 3: T.17, D.19, Q.20, R.51, R.54 Ligand excluded by PLIP SO4.91: 2 residues within 4Å: Chain 4: T.17, T.18 Ligand excluded by PLIP SO4.92: 2 residues within 4Å: Chain 4: Y.34, R.56 Ligand excluded by PLIP SO4.93: 3 residues within 4Å: Chain 4: T.47, S.50, R.51 Ligand excluded by PLIP SO4.94: 5 residues within 4Å: Chain 4: L.25, L.26, L.30 Chain 5: V.9, L.59 Ligand excluded by PLIP SO4.95: 5 residues within 4Å: Chain 5: L.25, L.26, L.29, L.30 Chain 6: V.9 Ligand excluded by PLIP SO4.96: 4 residues within 4Å: Chain 5: T.17, D.19, Q.20, R.54 Ligand excluded by PLIP SO4.97: 2 residues within 4Å: Chain 5: T.17, T.18 Ligand excluded by PLIP SO4.98: 7 residues within 4Å: Chain 4: V.9, L.59, L.60 Chain 6: L.25, L.26, L.29, L.30 Ligand excluded by PLIP SO4.99: 5 residues within 4Å: Chain 6: T.17, D.19, Q.20, R.51, R.54 Ligand excluded by PLIP SO4.100: 2 residues within 4Å: Chain 7: T.17, T.18 Ligand excluded by PLIP SO4.101: 2 residues within 4Å: Chain 7: Y.34, R.56 Ligand excluded by PLIP SO4.102: 3 residues within 4Å: Chain 7: T.47, S.50, R.51 Ligand excluded by PLIP SO4.103: 5 residues within 4Å: Chain 7: L.25, L.26, L.30 Chain 8: V.9, L.59 Ligand excluded by PLIP SO4.104: 5 residues within 4Å: Chain 8: L.25, L.26, L.29, L.30 Chain 9: V.9 Ligand excluded by PLIP SO4.105: 4 residues within 4Å: Chain 8: T.17, D.19, Q.20, R.54 Ligand excluded by PLIP SO4.106: 2 residues within 4Å: Chain 8: T.17, T.18 Ligand excluded by PLIP SO4.107: 7 residues within 4Å: Chain 7: V.9, L.59, L.60 Chain 9: L.25, L.26, L.29, L.30 Ligand excluded by PLIP SO4.108: 5 residues within 4Å: Chain 9: T.17, D.19, Q.20, R.51, R.54 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thakur, K.G. et al., Structural and biophysical studies on two promoter recognition domains of the extra-cytoplasmic function sigma factor sigma(C) from Mycobacterium tuberculosis. J.Biol.Chem. (2007)

Release Date

2006-12-26

Peptides

Probable RNA polymerase sigma-C factor: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

M
A

N
B

O
C

P
A

Q
B

R
C

S
A

T
B

U
C

V
A

W
B

X
C

Y
A

Z
B

0
C

1
A

2
B

3
C

4
A

5
B

6
C

7
A

8
B

9
C

Probable RNA polymerase sigma-C factor

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