SMTL ID : 2oi4.1

Crystal structure of human PIM1 in complex with fluorinated ruthenium pyridocarbazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: G.50, V.69, E.70, R.73 Ligands: EDO.3 Ligand excluded by PLIP

1 x JM1: FLUORINATED PYRIDOCARBAZOLE CYCLOPENTADIENYL RU(CO) COMPLEX(Non-covalent)

JM1.2: 18 residues within 4Å: Chain A: L.44, G.45, S.46, F.49, V.52, A.65, K.67, I.104, L.120, E.121, R.122, P.123, V.126, D.128, E.171, L.174, I.185, D.186 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:L.44, A:F.49, A:F.49, A:K.67, A:L.174, A:I.185, A:I.185, A:D.186 Hydrogen bonds: A:E.121

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: G.47, G.48, G.50, V.69, R.73 Ligands: CL.1 No protein-ligand interaction detected (PLIP) EDO.4: 6 residues within 4Å: Chain A: L.34, E.35, V.40, I.66, H.68, R.112 No protein-ligand interaction detected (PLIP) EDO.5: 1 residues within 4Å: Chain A: N.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.286

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.6: 12 residues within 4Å: Chain A: G.48, F.49, K.67, V.69, I.74, P.87, E.89, D.167, D.186, G.188, S.189, D.202 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.67, A:E.89, A:D.167, A:D.186, A:S.189, A:S.189 Water bridges: A:K.169, A:D.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pagano, N. et al., Ruthenium half-sandwich complexes as protein kinase inhibitors: derivatization of the pyridocarbazole pharmacophore ligand. Org.Biomol.Chem. (2007)

Release Date

2007-04-10

Peptides

Proto-oncogene serine/threonine-protein kinase Pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Proto-oncogene serine/threonine-protein kinase Pim-1

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