SMTL ID : 2ors.1

Murine Inducible Nitric Oxide Synthase Oxygenase Domain (DELTA 114) 4-(Benzo[1,3]dioxol-5-yloxy)-2-(4-imidazol-1-yl-phenoxy)-6-methyl-pyrimidine Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 19 residues within 4Å: Chain A: W.75, A.78, P.79, R.80, C.81, I.82, G.83, Q.86, L.90, S.123, M.236, F.250, N.251, G.252, W.253, M.255, Y.370, Y.372 Ligands: 391.2 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:W.75, A:W.75, A:W.75, A:A.78, A:I.82, A:L.90, A:L.90, A:F.250, A:F.250, A:W.253, A:Y.370, A:Y.370 Hydrogen bonds: A:R.80, A:Y.372 Salt bridges: A:R.80 pi-Stacking: A:W.75 Metal complexes: A:C.81 HEM.9: 19 residues within 4Å: Chain B: W.75, A.78, P.79, R.80, C.81, I.82, G.83, Q.86, L.90, S.123, M.236, F.250, N.251, G.252, W.253, M.255, Y.370, Y.372 Ligands: 391.10 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:W.75, B:W.75, B:W.75, B:A.78, B:I.82, B:L.90, B:L.90, B:F.250, B:F.250, B:W.253, B:Y.370, B:Y.370 Hydrogen bonds: B:R.80, B:Y.372, B:Y.372 Salt bridges: B:R.80 pi-Stacking: B:W.75 Metal complexes: B:C.81

2 x 391: 4-(1,3-BENZODIOXOL-5-YLOXY)-2-[4-(1H-IMIDAZOL-1-YL)PHENOXY]-6-METHYLPYRIMIDINE(Non-covalent)

391.2: 8 residues within 4Å: Chain A: Q.144, P.231, V.233, G.252, W.253, Y.254, M.255 Ligands: HEM.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.231, A:Y.254 Hydrogen bonds: A:M.255 391.10: 8 residues within 4Å: Chain B: Q.144, P.231, V.233, G.252, W.253, Y.254, M.255 Ligands: HEM.9 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.231, B:Y.254 Hydrogen bonds: B:M.255

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: W.87, S.88, N.330 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: D.65, I.68, F.69, K.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.69 EDO.5: 2 residues within 4Å: Chain A: N.2, P.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.2 EDO.6: 5 residues within 4Å: Chain A: K.4, V.365, L.366, F.369, Y.371 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.366, A:L.366, A:Y.371 EDO.7: 1 residues within 4Å: Chain A: Y.254 No protein-ligand interaction detected (PLIP) EDO.8: 1 residues within 4Å: Chain A: D.65 No protein-ligand interaction detected (PLIP) EDO.11: 3 residues within 4Å: Chain B: W.87, S.88, N.330 No protein-ligand interaction detected (PLIP) EDO.12: 4 residues within 4Å: Chain B: D.65, I.68, F.69, K.72 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.69 EDO.13: 2 residues within 4Å: Chain B: N.2, P.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.2 EDO.14: 5 residues within 4Å: Chain B: K.4, V.365, L.366, F.369, Y.371 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.366, B:L.366 EDO.15: 1 residues within 4Å: Chain B: Y.254 No protein-ligand interaction detected (PLIP) EDO.16: 3 residues within 4Å: Chain A: L.165, E.166 Chain B: D.65 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davey, D.D. et al., Design, Synthesis, and Activity of 2-Imidazol-1-ylpyrimidine Derived Inducible Nitric Oxide Synthase Dimerization Inhibitors. J.Med.Chem. (2007)

Release Date

2007-04-17

Peptides

Nitric oxide synthase, inducible: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nitric oxide synthase, inducible

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