- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 20 x CA: CALCIUM ION(Non-covalent)
CA.3: 6 residues within 4Å:- Chain A: D.73, G.74, D.76, L.78, D.96, E.99
6 PLIP interactions:6 interactions with chain A- Metal complexes: A:D.73, A:G.74, A:D.76, A:L.78, A:D.96, A:E.99
CA.4: 4 residues within 4Å:- Chain A: D.56, G.88, Q.90, D.92
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.56, A:G.88, A:Q.90, A:D.92, H2O.1, H2O.2
CA.5: 5 residues within 4Å:- Chain A: S.20, D.22, D.97, E.99, W.101
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.22, A:D.97, A:D.97, A:E.99, H2O.1
CA.6: 7 residues within 4Å:- Chain A: S.102, L.103, G.104, K.105, G.106, Q.107
- Chain D: L.103
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:L.103, A:G.104, A:K.105, H2O.1, H2O.1
CA.7: 2 residues within 4Å:- Chain A: S.40, T.43
6 PLIP interactions:2 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:S.40, A:T.43, H2O.2, H2O.2, H2O.2, H2O.3
CA.14: 6 residues within 4Å:- Chain B: D.73, G.74, D.76, L.78, D.96, E.99
6 PLIP interactions:6 interactions with chain B- Metal complexes: B:D.73, B:G.74, B:D.76, B:L.78, B:D.96, B:E.99
CA.15: 5 residues within 4Å:- Chain B: A.55, D.56, G.88, Q.90, D.92
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.56, B:G.88, B:Q.90, B:D.92, H2O.7
CA.16: 5 residues within 4Å:- Chain B: S.20, D.22, D.97, E.99, W.101
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.22, B:D.97, B:D.97, B:E.99, H2O.4
CA.17: 7 residues within 4Å:- Chain B: S.102, L.103, G.104, K.105, G.106, Q.107
- Chain C: L.103
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:L.103, B:K.105, H2O.5, H2O.5
CA.18: 2 residues within 4Å:- Chain B: S.40, T.43
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:S.40, B:T.43, H2O.5, H2O.6
CA.23: 6 residues within 4Å:- Chain C: D.73, G.74, D.76, L.78, D.96, E.99
6 PLIP interactions:6 interactions with chain C- Metal complexes: C:D.73, C:G.74, C:D.76, C:L.78, C:D.96, C:E.99
CA.24: 4 residues within 4Å:- Chain C: D.56, G.88, Q.90, D.92
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.56, C:G.88, C:Q.90, C:D.92, H2O.7, H2O.9
CA.25: 5 residues within 4Å:- Chain C: S.20, D.22, D.97, E.99, W.101
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.22, C:D.97, C:D.97, C:E.99, H2O.8
CA.26: 7 residues within 4Å:- Chain B: L.103
- Chain C: S.102, L.103, G.104, K.105, G.106, Q.107
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:L.103, C:G.104, C:K.105, H2O.8, H2O.8
CA.27: 2 residues within 4Å:- Chain C: S.40, T.43
6 PLIP interactions:2 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:S.40, C:T.43, H2O.9, H2O.9, H2O.9, H2O.10
CA.34: 6 residues within 4Å:- Chain D: D.73, G.74, D.76, L.78, D.96, E.99
6 PLIP interactions:6 interactions with chain D- Metal complexes: D:D.73, D:G.74, D:D.76, D:L.78, D:D.96, D:E.99
CA.35: 5 residues within 4Å:- Chain D: A.55, D.56, G.88, Q.90, D.92
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.56, D:G.88, D:Q.90, D:D.92, H2O.14
CA.36: 5 residues within 4Å:- Chain D: S.20, D.22, D.97, E.99, W.101
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.22, D:D.97, D:D.97, D:E.99, H2O.11
CA.37: 7 residues within 4Å:- Chain A: L.103
- Chain D: S.102, L.103, G.104, K.105, G.106, Q.107
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:L.103, D:K.105, H2O.12, H2O.12
CA.38: 2 residues within 4Å:- Chain D: S.40, T.43
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:S.40, D:T.43, H2O.12, H2O.13
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 4 residues within 4Å:- Chain A: G.104, S.110, F.112, F.141
Ligand excluded by PLIPCL.9: 2 residues within 4Å:- Chain A: R.34, F.112
Ligand excluded by PLIPCL.10: 4 residues within 4Å:- Chain A: N.18, Y.19
- Chain B: N.18, Y.19
Ligand excluded by PLIPCL.19: 3 residues within 4Å:- Chain B: G.104, S.110, F.112
Ligand excluded by PLIPCL.28: 4 residues within 4Å:- Chain C: G.104, S.110, F.112, F.141
Ligand excluded by PLIPCL.29: 2 residues within 4Å:- Chain C: R.34, F.112
Ligand excluded by PLIPCL.30: 4 residues within 4Å:- Chain C: N.18, Y.19
- Chain D: N.18, Y.19
Ligand excluded by PLIPCL.39: 3 residues within 4Å:- Chain D: G.104, S.110, F.112
Ligand excluded by PLIP- 4 x 5MR: NALPHA-{(2S)-3-[(S)-HYDROXY(PHENYL)PHOSPHORYL]-2-[(3-PHENYLISOXAZOL-5-YL)METHYL]PROPANOYL}-L-TRYPTOPHANAMIDE(Non-covalent)
5MR.11: 19 residues within 4Å:- Chain A: F.1, D.73, G.77, L.78, L.79, A.80, H.81, V.114, H.117, Q.118, H.121, H.127, L.134, Y.136, P.137, M.138, Y.139, R.140
- Ligands: ZN.1
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:L.78, A:L.78, A:H.81, A:Y.139, A:Y.139
- Hydrogen bonds: A:G.77, A:L.79, A:A.80, A:Q.118, A:P.137, A:Y.139
- pi-Stacking: A:F.1, A:H.117
5MR.20: 16 residues within 4Å:- Chain B: G.77, L.78, L.79, A.80, H.81, V.114, H.117, Q.118, H.121, H.127, L.134, Y.136, P.137, M.138, Y.139
- Ligands: ZN.12
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:L.78, B:L.78, B:H.81, B:Y.139
- Hydrogen bonds: B:G.77, B:L.79, B:H.117, B:Q.118, B:P.137, B:Y.139
- pi-Stacking: B:H.117
5MR.31: 19 residues within 4Å:- Chain C: F.1, D.73, G.77, L.78, L.79, A.80, H.81, V.114, H.117, Q.118, H.121, H.127, L.134, Y.136, P.137, M.138, Y.139, R.140
- Ligands: ZN.21
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:L.78, C:L.78, C:H.81, C:Y.139, C:Y.139
- Hydrogen bonds: C:G.77, C:L.79, C:A.80, C:H.117, C:Q.118, C:P.137, C:Y.139
- pi-Stacking: C:F.1, C:H.117
5MR.40: 16 residues within 4Å:- Chain D: G.77, L.78, L.79, A.80, H.81, V.114, H.117, Q.118, H.121, H.127, L.134, Y.136, P.137, M.138, Y.139
- Ligands: ZN.32
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:L.78, D:L.78, D:H.81, D:Y.139
- Hydrogen bonds: D:G.77, D:L.79, D:Q.118, D:P.137, D:Y.139
- pi-Stacking: D:H.117
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tochowicz, A. et al., Crystal Structures of MMP-9 Complexes with Five Inhibitors: Contribution of the Flexible Arg424 Side-chain to Selectivity. J.Mol.Biol. (2007)
- Release Date
- 2007-06-19
- Peptides
- Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 20 x CA: CALCIUM ION(Non-covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x 5MR: NALPHA-{(2S)-3-[(S)-HYDROXY(PHENYL)PHOSPHORYL]-2-[(3-PHENYLISOXAZOL-5-YL)METHYL]PROPANOYL}-L-TRYPTOPHANAMIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tochowicz, A. et al., Crystal Structures of MMP-9 Complexes with Five Inhibitors: Contribution of the Flexible Arg424 Side-chain to Selectivity. J.Mol.Biol. (2007)
- Release Date
- 2007-06-19
- Peptides
- Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B