- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 12 x CA: CALCIUM ION(Non-covalent)
CA.3: 7 residues within 4Å:- Chain A: D.73, G.74, D.76, G.77, L.78, D.96, E.99
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.73, A:G.74, A:L.78, A:D.96, A:E.99
CA.4: 3 residues within 4Å:- Chain A: D.22, D.97, E.99
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.22, A:D.22, A:D.97, A:E.99, H2O.1
CA.5: 6 residues within 4Å:- Chain A: S.102, L.103, K.105, G.106, Q.107
- Chain D: L.103
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:S.102, A:K.105, H2O.1, H2O.3
CA.11: 6 residues within 4Å:- Chain B: D.73, G.74, D.76, L.78, D.96, E.99
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.73, B:D.73, B:L.78, B:D.96, B:E.99
CA.12: 7 residues within 4Å:- Chain B: S.102, L.103, G.104, K.105, G.106, Q.107
- Chain C: L.103
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:L.103, B:K.105, H2O.4
CA.13: 4 residues within 4Å:- Chain B: D.22, D.97, E.99, W.101
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.22, B:D.97, B:D.97, B:E.99
CA.17: 7 residues within 4Å:- Chain C: D.73, G.74, D.76, G.77, L.78, D.96, E.99
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.73, C:G.74, C:L.78, C:D.96, C:E.99
CA.18: 3 residues within 4Å:- Chain C: D.22, D.97, E.99
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.22, C:D.22, C:D.97, C:E.99, H2O.6
CA.19: 6 residues within 4Å:- Chain B: L.103
- Chain C: S.102, L.103, K.105, G.106, Q.107
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:S.102, C:K.105, H2O.5, H2O.8
CA.25: 6 residues within 4Å:- Chain D: D.73, G.74, D.76, L.78, D.96, E.99
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.73, D:D.73, D:L.78, D:D.96, D:E.99
CA.26: 7 residues within 4Å:- Chain A: L.103
- Chain D: S.102, L.103, G.104, K.105, G.106, Q.107
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:L.103, D:K.105, H2O.9
CA.27: 4 residues within 4Å:- Chain D: D.22, D.97, E.99, W.101
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.22, D:D.97, D:D.97, D:E.99
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 5 residues within 4Å:- Chain A: L.103, G.104, S.110, F.112, F.141
Ligand excluded by PLIPCL.7: 4 residues within 4Å:- Chain A: N.18, Y.19
- Chain B: N.18, Y.19
Ligand excluded by PLIPCL.20: 5 residues within 4Å:- Chain C: L.103, G.104, S.110, F.112, F.141
Ligand excluded by PLIPCL.21: 4 residues within 4Å:- Chain C: N.18, Y.19
- Chain D: N.18, Y.19
Ligand excluded by PLIP- 4 x 8MR: (3R)-4,4-DIFLUORO-3-[(4-METHOXYPHENYL)SULFONYL]BUTANOIC ACID(Non-covalent)
8MR.8: 13 residues within 4Å:- Chain A: L.78, L.79, A.80, H.81, V.114, H.117, Q.118, H.121, H.127, Y.136, P.137, Y.139
- Ligands: ZN.1
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.79, A:V.114
- Hydrogen bonds: A:Q.118
- Water bridges: A:A.82
- Salt bridges: A:H.117, A:H.121, A:H.127
- pi-Stacking: A:H.117
8MR.14: 14 residues within 4Å:- Chain B: L.78, L.79, A.80, H.81, H.117, Q.118, H.121, H.127, L.134, Y.136, P.137, M.138, Y.139
- Ligands: ZN.9
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:H.117, B:Y.139
- Hydrogen bonds: B:Q.118, B:Q.118
- Water bridges: B:R.140
- Salt bridges: B:H.117, B:H.121, B:H.127
8MR.22: 13 residues within 4Å:- Chain C: L.78, L.79, A.80, H.81, V.114, H.117, Q.118, H.121, H.127, Y.136, P.137, Y.139
- Ligands: ZN.15
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:L.79, C:V.114
- Hydrogen bonds: C:Q.118
- Water bridges: C:A.82
- Salt bridges: C:H.117, C:H.121, C:H.127
- pi-Stacking: C:H.117
8MR.28: 14 residues within 4Å:- Chain D: L.78, L.79, A.80, H.81, H.117, Q.118, H.121, H.127, L.134, Y.136, P.137, M.138, Y.139
- Ligands: ZN.23
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:H.117, D:Y.139
- Hydrogen bonds: D:Q.118, D:Q.118
- Water bridges: D:R.140
- Salt bridges: D:H.117, D:H.121, D:H.127
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tochowicz, A. et al., Crystal Structures of MMP-9 Complexes with Five Inhibitors: Contribution of the Flexible Arg424 Side-chain to Selectivity. J.Mol.Biol. (2007)
- Release Date
- 2007-06-19
- Peptides
- Matrix metalloproteinase-9 (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 12 x CA: CALCIUM ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x 8MR: (3R)-4,4-DIFLUORO-3-[(4-METHOXYPHENYL)SULFONYL]BUTANOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tochowicz, A. et al., Crystal Structures of MMP-9 Complexes with Five Inhibitors: Contribution of the Flexible Arg424 Side-chain to Selectivity. J.Mol.Biol. (2007)
- Release Date
- 2007-06-19
- Peptides
- Matrix metalloproteinase-9 (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B