SMTL ID : 2own.1 (1 other biounit)

Crystal structure of oleoyl thioesterase (putative) (NP_784467.1) from Lactobacillus plantarum at 2.00 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: P.165, Y.166, H.167, R.169 Chain B: P.165, Y.166, H.167, R.169 13 PLIP interactions: 7 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:H.167, A:H.167, B:H.167 Water bridges: A:H.167, A:R.169, A:R.169, B:H.167, B:R.169, B:R.169 Salt bridges: A:H.167, A:R.169, B:H.167, B:R.169 SO4.2: 5 residues within 4Å: Chain A: R.28, R.74, D.201, R.255 Ligands: ACT.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.201, A:R.255 Water bridges: A:R.28, A:D.201 Salt bridges: A:R.28 SO4.3: 2 residues within 4Å: Chain A: E.156, K.246 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.156, A:K.246 Salt bridges: A:K.246 SO4.4: 3 residues within 4Å: Chain A: V.143, K.144, R.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.144, A:R.145 SO4.5: 3 residues within 4Å: Chain A: Q.67, L.149, R.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.67 Salt bridges: A:R.151 SO4.13: 5 residues within 4Å: Chain B: Q.67, R.148, R.151, R.208 Ligands: ACT.14 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.67, B:Q.67 Water bridges: B:L.149 Salt bridges: B:R.151, B:R.208

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 4 residues within 4Å: Chain A: T.26, R.28, R.77 Ligands: SO4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.26 ACT.14: 3 residues within 4Å: Chain B: Q.67, F.95 Ligands: SO4.13 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.95 Water bridges: B:Q.67

2 x UNL: UNKNOWN LIGAND(Non-functional Binders)

UNL.7: 8 residues within 4Å: Chain A: S.42, S.46, W.63, G.88, A.96, R.98, W.117, Y.138 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.42, A:S.46, A:R.98, A:Y.138 Water bridges: A:E.43, A:L.51, A:S.140, A:S.140 UNL.15: 7 residues within 4Å: Chain B: S.42, S.46, W.63, A.96, R.98, W.117, Y.138 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.42, B:S.46, B:S.46, B:R.98, B:Y.138 Water bridges: B:S.140, B:S.140

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 3 residues within 4Å: Chain A: W.101, Q.109, Y.112 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.109, A:Q.109 Water bridges: A:R.103, A:Y.112, A:Y.112 GOL.9: 2 residues within 4Å: Chain A: A.7, N.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.7 GOL.10: 6 residues within 4Å: Chain A: A.69, I.70, D.71, Y.112, T.114, H.204 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.71, A:D.71, A:Y.112 Water bridges: A:Y.97 GOL.11: 3 residues within 4Å: Chain A: S.13, E.14, Q.15 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.13, A:S.13, A:Q.15, A:Q.15 GOL.12: 6 residues within 4Å: Chain A: V.64, T.66, Y.209, E.210, N.211, E.212 5 PLIP interactions: 5 interactions with chain A Water bridges: A:T.66, A:Y.209, A:E.210, A:N.211, A:E.212 GOL.16: 4 residues within 4Å: Chain A: R.17 Chain B: Y.12, E.14, D.44 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.12, B:Y.12 Water bridges: B:Q.15 GOL.17: 2 residues within 4Å: Chain B: Q.15, V.81 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.17 GOL.18: 4 residues within 4Å: Chain B: D.71, W.101, Q.109, Y.112 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.71, B:D.71, B:Q.109, B:Q.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of oleoyl thioesterase (putative) (NP_784467.1) from Lactobacillus plantarum at 2.00 A resolution. To be published

Release Date

2007-02-27

Peptides

Putative Oleoyl-[acyl-carrier protein] thioesterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative Oleoyl-[acyl-carrier protein] thioesterase

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