SMTL ID : 2own.2 (1 other biounit)

Crystal structure of oleoyl thioesterase (putative) (NP_784467.1) from Lactobacillus plantarum at 2.00 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: P.165, Y.166, H.167, R.169 Chain B: P.165, Y.166, H.167, R.169 13 PLIP interactions: 7 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:H.167, A:H.167, B:H.167 Water bridges: A:H.167, A:R.169, A:R.169, B:H.167, B:R.169, B:R.169 Salt bridges: A:H.167, A:R.169, B:H.167, B:R.169 SO4.2: 5 residues within 4Å: Chain A: R.28, R.74, D.201, R.255 Ligands: ACT.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.201, A:R.255 Water bridges: A:R.28, A:D.201 Salt bridges: A:R.28 SO4.3: 2 residues within 4Å: Chain A: E.156, K.246 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.156, A:K.246 Salt bridges: A:K.246 SO4.4: 5 residues within 4Å: Chain A: V.143, K.144, R.145 Chain C: P.93, K.129 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:K.144, A:R.145 Salt bridges: C:K.129 SO4.5: 3 residues within 4Å: Chain A: Q.67, L.149, R.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.67 Salt bridges: A:R.151 SO4.13: 5 residues within 4Å: Chain B: Q.67, R.148, R.151, R.208 Ligands: ACT.14 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.67, B:Q.67 Water bridges: B:L.149 Salt bridges: B:R.151, B:R.208 SO4.19: 8 residues within 4Å: Chain C: P.165, Y.166, H.167, R.169 Chain D: P.165, Y.166, H.167, R.169 13 PLIP interactions: 7 interactions with chain D, 6 interactions with chain C Hydrogen bonds: D:H.167, C:H.167, C:H.167 Water bridges: D:H.167, D:H.167, D:R.169, D:R.169, C:R.169, C:R.169 Salt bridges: D:H.167, D:R.169, C:H.167, C:R.169 SO4.20: 5 residues within 4Å: Chain C: R.28, R.74, D.201, R.255 Ligands: ACT.24 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.201, C:R.255 Water bridges: C:R.28 Salt bridges: C:R.28 SO4.21: 2 residues within 4Å: Chain C: E.156, K.246 4 PLIP interactions: 4 interactions with chain C Water bridges: C:E.156, C:E.156, C:K.246 Salt bridges: C:K.246 SO4.22: 5 residues within 4Å: Chain A: P.93, K.129 Chain C: V.143, K.144, R.145 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Salt bridges: A:K.129 Hydrogen bonds: C:K.144, C:R.145 SO4.23: 3 residues within 4Å: Chain C: Q.67, L.149, R.151 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.67 Salt bridges: C:R.151 SO4.31: 5 residues within 4Å: Chain D: Q.67, R.148, R.151, R.208 Ligands: ACT.32 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:Q.67, D:Q.67 Water bridges: D:L.149 Salt bridges: D:R.151, D:R.208

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 4 residues within 4Å: Chain A: T.26, R.28, R.77 Ligands: SO4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.26 ACT.14: 3 residues within 4Å: Chain B: Q.67, F.95 Ligands: SO4.13 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.95 Water bridges: B:Q.67 ACT.24: 4 residues within 4Å: Chain C: T.26, R.28, R.77 Ligands: SO4.20 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.26 ACT.32: 3 residues within 4Å: Chain D: Q.67, F.95 Ligands: SO4.31 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:F.95 Water bridges: D:Q.67

4 x UNL: UNKNOWN LIGAND(Non-functional Binders)

UNL.7: 8 residues within 4Å: Chain A: S.42, S.46, W.63, G.88, A.96, R.98, W.117, Y.138 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.42, A:S.46, A:R.98, A:Y.138 Water bridges: A:E.43, A:L.51, A:S.140, A:S.140 UNL.15: 7 residues within 4Å: Chain B: S.42, S.46, W.63, A.96, R.98, W.117, Y.138 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.42, B:S.46, B:S.46, B:R.98, B:Y.138 Water bridges: B:S.140, B:S.140 UNL.25: 8 residues within 4Å: Chain C: S.42, S.46, W.63, G.88, A.96, R.98, W.117, Y.138 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:S.42, C:S.46, C:R.98, C:Y.138 Water bridges: C:E.43, C:L.51, C:S.140, C:S.140 UNL.33: 7 residues within 4Å: Chain D: S.42, S.46, W.63, A.96, R.98, W.117, Y.138 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:S.42, D:S.46, D:S.46, D:R.98, D:Y.138 Water bridges: D:S.140, D:S.140

16 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 3 residues within 4Å: Chain A: W.101, Q.109, Y.112 Ligand excluded by PLIP GOL.9: 2 residues within 4Å: Chain A: A.7, N.8 Ligand excluded by PLIP GOL.10: 6 residues within 4Å: Chain A: A.69, I.70, D.71, Y.112, T.114, H.204 Ligand excluded by PLIP GOL.11: 3 residues within 4Å: Chain A: S.13, E.14, Q.15 Ligand excluded by PLIP GOL.12: 6 residues within 4Å: Chain A: V.64, T.66, Y.209, E.210, N.211, E.212 Ligand excluded by PLIP GOL.16: 4 residues within 4Å: Chain A: R.17 Chain B: Y.12, E.14, D.44 Ligand excluded by PLIP GOL.17: 2 residues within 4Å: Chain B: Q.15, V.81 Ligand excluded by PLIP GOL.18: 4 residues within 4Å: Chain B: D.71, W.101, Q.109, Y.112 Ligand excluded by PLIP GOL.26: 3 residues within 4Å: Chain C: W.101, Q.109, Y.112 Ligand excluded by PLIP GOL.27: 2 residues within 4Å: Chain C: A.7, N.8 Ligand excluded by PLIP GOL.28: 6 residues within 4Å: Chain C: A.69, I.70, D.71, Y.112, T.114, H.204 Ligand excluded by PLIP GOL.29: 3 residues within 4Å: Chain C: S.13, E.14, Q.15 Ligand excluded by PLIP GOL.30: 6 residues within 4Å: Chain C: V.64, T.66, Y.209, E.210, N.211, E.212 Ligand excluded by PLIP GOL.34: 4 residues within 4Å: Chain C: R.17 Chain D: Y.12, E.14, D.44 Ligand excluded by PLIP GOL.35: 2 residues within 4Å: Chain D: Q.15, V.81 Ligand excluded by PLIP GOL.36: 4 residues within 4Å: Chain D: D.71, W.101, Q.109, Y.112 Ligand excluded by PLIP

Links

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Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of oleoyl thioesterase (putative) (NP_784467.1) from Lactobacillus plantarum at 2.00 A resolution. To be published

Release Date

2007-02-27

Peptides

Putative Oleoyl-[acyl-carrier protein] thioesterase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Putative Oleoyl-[acyl-carrier protein] thioesterase

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