SMTL ID : 2p8i.1 (1 other biounit)

Crystal structure of putative dioxygenase (YP_555069.1) from Burkholderia xenovorans LB400 at 1.40 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: D.100, A.101, A.102 Chain B: H.80, G.106 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain B: R.46 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: M.2 Chain B: L.78, N.79, H.80, G.81 Ligand excluded by PLIP

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: G.45, R.46, H.48, Q.61 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.46, A:Q.61 Water bridges: A:Q.61 Salt bridges: A:H.48 PO4.7: 7 residues within 4Å: Chain B: H.14, H.16, P.54, H.55, Q.61, H.88, H.98 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Q.61 Water bridges: B:H.14, B:H.14, B:H.88 Salt bridges: B:H.14, B:H.16, B:H.55, B:H.88, B:H.98

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 9 residues within 4Å: Chain A: A.26, T.29, L.30, N.79, H.80, G.81, L.83 Chain B: M.2, F.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.30 Water bridges: A:A.82 EDO.4: 5 residues within 4Å: Chain A: K.41, L.42, Q.43, A.63, Q.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.43, A:Q.68, A:Q.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative dioxygenase (YP_555069.1) from Burkholderia xenovorans LB400 at 1.40 A resolution. To be published

Release Date

2007-04-24

Peptides

Putative dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative dioxygenase

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