- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.2: 8 residues within 4Å:- Chain A: D.982, V.983, N.984, A.1055, E.1056, F.1058, G.1060, S.1062
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.982, A:A.1055, A:F.1058, A:G.1060, A:S.1062
CA.9: 8 residues within 4Å:- Chain B: D.982, V.983, N.984, A.1055, E.1056, F.1058, G.1060, S.1062
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.982, B:A.1055, B:F.1058, B:G.1060, B:S.1062
- 6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.3: 12 residues within 4Å:- Chain A: W.683, C.688, I.689, C.691, N.692, C.694, I.737, C.754, P.755, P.756, A.760, L.761
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.688, A:C.691, A:C.694, A:C.754
SF4.4: 12 residues within 4Å:- Chain A: P.681, C.698, P.699, A.702, I.703, C.744, M.745, G.746, C.747, G.748, N.749, C.750
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.698, A:C.744, A:C.747, A:C.750
SF4.5: 11 residues within 4Å:- Chain A: K.458, A.810, C.811, C.814, E.816, C.839, T.990, S.994, C.1070, I.1071
- Chain B: M.1202
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B,- Salt bridges: A:E.816, B:D.1197
- Metal complexes: A:C.811, A:C.814, A:C.839, A:C.1070
SF4.10: 12 residues within 4Å:- Chain B: W.683, C.688, I.689, C.691, N.692, C.694, I.737, C.754, P.755, P.756, A.760, L.761
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.688, B:C.691, B:C.694, B:C.754
SF4.11: 12 residues within 4Å:- Chain B: P.681, C.698, P.699, A.702, I.703, C.744, M.745, G.746, C.747, G.748, N.749, C.750
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.698, B:C.744, B:C.747, B:C.750
SF4.12: 11 residues within 4Å:- Chain A: M.1202
- Chain B: K.458, A.810, C.811, C.814, E.816, C.839, T.990, S.994, C.1070, I.1071
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A,- Salt bridges: B:E.816, A:D.1197
- Metal complexes: B:C.811, B:C.814, B:C.839, B:C.1070
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.6: 22 residues within 4Å:- Chain A: Y.27, P.28, I.29, E.63, E.816, G.838, C.839, F.868, E.869, G.961, D.962, G.963, W.964, I.968, T.990, V.992, Y.993, S.994, N.995, T.996
- Ligands: MG.1, PYR.7
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:Y.27, A:I.29, A:F.868, A:F.868, A:I.968, A:Y.993
- Hydrogen bonds: A:C.839, A:G.961, A:D.962, A:G.963, A:W.964, A:S.994, A:N.995
- Water bridges: A:E.816, A:F.868, A:F.868, A:T.990
- pi-Stacking: A:F.868
TPP.13: 22 residues within 4Å:- Chain B: Y.27, P.28, I.29, E.63, E.816, G.838, C.839, F.868, E.869, G.961, D.962, G.963, W.964, I.968, T.990, V.992, Y.993, S.994, N.995, T.996
- Ligands: MG.8, PYR.14
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:Y.27, B:I.29, B:F.868, B:F.868, B:I.968, B:Y.993
- Hydrogen bonds: B:C.839, B:G.961, B:D.962, B:G.963, B:W.964, B:S.994, B:N.995
- Water bridges: B:F.868, B:F.868, B:D.962, B:T.990
- pi-Stacking: B:F.868
- 2 x PYR: PYRUVIC ACID(Non-covalent)
PYR.7: 8 residues within 4Å:- Chain A: I.29, T.30, R.113, I.842, N.995, T.996
- Chain B: M.1201
- Ligands: TPP.6
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.842
- Hydrogen bonds: A:T.30, A:T.30, A:N.995
- Salt bridges: A:R.113
PYR.14: 8 residues within 4Å:- Chain A: M.1201
- Chain B: I.29, T.30, R.113, I.842, N.995, T.996
- Ligands: TPP.13
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:I.842
- Hydrogen bonds: B:T.30, B:T.30, B:N.995
- Salt bridges: B:R.113
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chabriere, E. et al., Crystal structures of the key anaerobic enzyme pyruvate:ferredoxin oxidoreductase, free and in complex with pyruvate. Nat.Struct.Biol. (1999)
- Release Date
- 1999-04-23
- Peptides
- PROTEIN (PYRUVATE-FERREDOXIN OXIDOREDUCTASE): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 2 x PYR: PYRUVIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chabriere, E. et al., Crystal structures of the key anaerobic enzyme pyruvate:ferredoxin oxidoreductase, free and in complex with pyruvate. Nat.Struct.Biol. (1999)
- Release Date
- 1999-04-23
- Peptides
- PROTEIN (PYRUVATE-FERREDOXIN OXIDOREDUCTASE): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B