SMTL ID : 2pnk.1 (5 other biounits)

CRYSTAL STRUCTURE OF AN URONATE ISOMERASE (BH0493) FROM BACILLUS HALODURANS C-125 AT 2.00 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: E.333 Chain B: E.333 Chain C: E.333 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.333

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: K.279, E.305 Chain B: K.279, E.305 Chain C: K.279, E.305 Ligand excluded by PLIP

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 8 residues within 4Å: Chain A: R.315, K.316 Chain B: H.50, Y.51, A.54, A.273, W.327, F.328 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:W.327, A:R.315, A:K.316 FMT.9: 7 residues within 4Å: Chain B: R.315, K.316 Chain C: H.50, A.54, A.273, W.327, F.328 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:R.315, B:K.316, C:W.327 FMT.12: 6 residues within 4Å: Chain A: H.50, A.54, W.327, F.328 Chain C: R.315, K.316 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.315, C:R.315, C:K.316

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: N.177, E.178, Y.179, E.180, Q.181, N.236 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.177, A:Y.179, A:E.180, A:Q.181, A:N.236 Water bridges: A:N.236, A:N.236, A:R.237 GOL.5: 7 residues within 4Å: Chain A: H.29, H.50, Y.51, W.326, W.327, D.356, R.358 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.51, A:D.356, A:R.358, A:R.358 Water bridges: A:Y.49, A:D.275, A:D.275, A:W.327, A:N.330 GOL.6: 3 residues within 4Å: Chain A: D.211, W.212, R.215 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.211 Water bridges: A:D.211 GOL.7: 6 residues within 4Å: Chain A: F.231, P.232, D.283, E.286, H.287, R.290 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.231, A:E.286, A:H.287, A:R.290 Water bridges: A:F.231 GOL.10: 6 residues within 4Å: Chain B: H.50, Y.51, W.326, W.327, D.356, R.358 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Y.51, B:R.358, B:R.358 Water bridges: B:Y.49, B:D.275, B:D.356, B:D.356

1 x UNL: UNKNOWN LIGAND(Non-functional Binders)

UNL.8: 7 residues within 4Å: Chain B: N.177, E.178, Y.179, E.180, S.235, N.236, R.237 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:N.177, B:E.180, B:S.235, B:N.236, B:N.236, B:R.237 Water bridges: B:Y.179, B:Y.179, B:E.180, B:E.180, B:Q.181, B:E.233, B:S.235, B:S.235, B:R.237

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.11: 7 residues within 4Å: Chain C: H.29, H.50, Y.51, W.326, W.327, D.356, R.358 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Y.51, C:W.327 Water bridges: C:Y.49 Salt bridges: C:H.29, C:H.50, C:R.358

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.13: 4 residues within 4Å: Chain C: P.227, T.228, K.279, S.281 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:T.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of uncharacterized protein (NP_241359.1) from Bacillus halodurans at 2.00 A resolution. To be published

Release Date

2007-05-08

Peptides

BH0493 protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

BH0493 protein

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