SMTL ID : 2pnk.2 (5 other biounits)

CRYSTAL STRUCTURE OF AN URONATE ISOMERASE (BH0493) FROM BACILLUS HALODURANS C-125 AT 2.00 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: K.279, E.305 Chain B: K.279, E.305 Chain C: K.279, E.305 Ligand excluded by PLIP

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: H.29, H.50, Y.51, W.327, D.356, R.358 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.51, A:D.356 Salt bridges: A:H.29, A:H.50, A:R.358 PO4.10: 7 residues within 4Å: Chain C: H.29, H.50, Y.51, W.326, W.327, D.356, R.358 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Y.51, C:W.327 Water bridges: C:D.275 Salt bridges: C:H.29, C:H.50, C:R.358

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 7 residues within 4Å: Chain A: R.315, K.316 Chain B: H.50, Y.51, A.54, W.327, F.328 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.315, A:K.316, B:H.50 FMT.4: 7 residues within 4Å: Chain A: H.27, H.29, T.144, R.171, A.222, S.224, M.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.224 FMT.7: 7 residues within 4Å: Chain B: R.315, K.316 Chain C: H.50, Y.51, A.54, W.327, F.328 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:W.327, B:R.315, B:K.316 FMT.12: 6 residues within 4Å: Chain A: H.50, A.54, W.327, F.328 Chain C: R.315, K.316 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:R.315, C:R.315, C:K.316, A:H.50

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: P.332, N.336 Chain C: R.340 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Water bridges: C:R.340, A:N.336 Hydrogen bonds: A:P.332 GOL.6: 2 residues within 4Å: Chain A: D.140, W.410 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.410 GOL.8: 6 residues within 4Å: Chain B: H.29, H.50, Y.51, W.327, D.356, R.358 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.29, B:Y.51, B:Y.51, B:R.358 Water bridges: B:W.327, B:N.330 GOL.9: 1 residues within 4Å: Chain B: S.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.6, B:S.6

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.11: 2 residues within 4Å: Chain C: L.157, W.212 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.157, C:W.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of uncharacterized protein (NP_241359.1) from Bacillus halodurans at 2.00 A resolution. To be published

Release Date

2007-05-08

Peptides

BH0493 protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

BH0493 protein

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