SMTL ID : 2pnu.1

Crystal structure of human androgen receptor ligand-binding domain in complex with EM-5744

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.43, F.44, K.124, R.126 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.44 Water bridges: A:A.45, A:R.126 Salt bridges: A:K.124, A:R.126

1 x ENM: (5S,8R,9S,10S,13R,14S,17S)-13-{2-[(3,5-DIFLUOROBENZYL)OXY]ETHYL}-17-HYDROXY-10-METHYLHEXADECAHYDRO-3H-CYCLOPENTA[A]PHENANTHREN-3-ONE(Non-covalent)

ENM.2: 20 residues within 4Å: Chain A: L.48, L.51, N.52, L.54, G.55, L.59, Q.85, W.88, M.89, M.92, M.96, R.99, F.111, L.220, H.221, F.223, T.224, F.238, I.245, V.250 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.48, A:L.54, A:W.88, A:W.88, A:M.92, A:F.111, A:F.111, A:L.220, A:F.223, A:I.245 Hydrogen bonds: A:N.52, A:R.99, A:T.224 Water bridges: A:M.96

1 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.3: 4 residues within 4Å: Chain A: V.31, C.33, P.113, D.114 No protein-ligand interaction detected (PLIP)

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 2 residues within 4Å: Chain A: H.136, W.143 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.136 pi-Cation interactions: A:W.143, A:W.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cantin, L. et al., Structural Characterization of the Human Androgen Receptor Ligand-binding Domain Complexed with EM5744, a Rationally Designed Steroidal Ligand Bearing a Bulky Chain Directed toward Helix 12. J.Biol.Chem. (2007)

Release Date

2007-09-11

Peptides

Androgen receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Androgen receptor

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