SMTL ID : 2poq.1

Dimeric Dihydrodiol Dehydrogenase complexed with inhibitor, Isoascorbic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.9, V.10, A.36, R.37, R.41, Y.58 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.10, A:R.37, A:Y.58, A:Y.58 Salt bridges: A:R.37, A:R.41 SO4.2: 3 residues within 4Å: Chain A: R.114, V.309, E.312 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.114, A:R.114 Salt bridges: A:R.114 SO4.3: 6 residues within 4Å: Chain A: A.2, L.3, S.27, E.28, R.293, R.297 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.3, A:E.28, A:R.297 Salt bridges: A:R.293 SO4.4: 4 residues within 4Å: Chain A: G.11, L.12, Q.75, R.163 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.12, A:Q.75 Salt bridges: A:R.163 SO4.7: 6 residues within 4Å: Chain B: S.9, V.10, A.36, R.37, R.41, Y.58 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:V.10, B:R.37, B:Y.58 Water bridges: B:Y.58 Salt bridges: B:R.37, B:R.41 SO4.8: 3 residues within 4Å: Chain B: R.114, V.309, E.312 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.114, B:R.114 Salt bridges: B:R.114 SO4.9: 6 residues within 4Å: Chain B: A.2, L.3, S.27, E.28, R.293, R.297 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.2, B:L.3, B:E.28, B:R.297 Salt bridges: B:R.293 SO4.10: 4 residues within 4Å: Chain B: G.11, L.12, Q.75, R.163 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.12, B:Q.75 Salt bridges: B:R.163

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.5: 7 residues within 4Å: Chain A: A.152, Y.180, C.181, Q.183, F.184, C.253, W.254 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.183 BME.11: 7 residues within 4Å: Chain B: A.152, Y.180, C.181, Q.183, F.184, C.253, W.254 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.183

2 x ISD: ISOASCORBIC ACID(Non-covalent)

ISD.6: 7 residues within 4Å: Chain A: K.156, L.177, Y.180, W.254, N.278, F.279, D.280 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.156, A:K.156, A:Y.180, A:D.280 Salt bridges: A:K.156 ISD.12: 7 residues within 4Å: Chain B: K.156, L.177, Y.180, W.254, N.278, F.279, D.280 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.156, B:K.156, B:Y.180, B:Y.180, B:D.280 Salt bridges: B:K.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carbone, V. et al., Structure of monkey dimeric dihydrodiol dehydrogenase in complex with isoascorbic acid. Acta Crystallogr.,Sect.D (2008)

Release Date

2007-07-31

Peptides

Dimeric dihydrodiol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

Dimeric dihydrodiol dehydrogenase

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