SMTL ID : 3ohs.1

Crystal Structure of Mammalian Dimeric Dihydrodiol Dehydrogenase in complex with Dihydroxyacetone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.9, V.10, A.36, R.37, R.41, Y.58 Ligand excluded by PLIP SO4.2: 5 residues within 4Å: Chain A: A.2, L.3, S.27, R.293, R.297 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: R.114, V.309, E.312 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: G.11, L.12, Q.75, R.163 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: E.133, R.136, V.305 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: R.4, E.68 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain A: K.275, N.276, C.277, F.279, N.281, G.282 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain A: K.156, W.254, F.279, D.280 Ligands: 2HA.10 Ligand excluded by PLIP SO4.11: 6 residues within 4Å: Chain B: S.9, V.10, A.36, R.37, R.41, Y.58 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain B: A.2, L.3, S.27, R.293, R.297 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: R.114, V.309, E.312 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain B: G.11, L.12, Q.75, R.163 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain B: E.133, R.136, V.305 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: R.4, E.68 Ligand excluded by PLIP SO4.17: 6 residues within 4Å: Chain B: K.275, N.276, C.277, F.279, N.281, G.282 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain B: K.156, W.254, F.279, D.280 Ligands: 2HA.20 Ligand excluded by PLIP

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.9: 8 residues within 4Å: Chain A: A.152, Y.180, C.181, Q.183, F.184, A.238, C.253, W.254 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.183 BME.19: 8 residues within 4Å: Chain B: A.152, Y.180, C.181, Q.183, F.184, A.238, C.253, W.254 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.183

2 x 2HA: Dihydroxyacetone(Non-covalent)

2HA.10: 5 residues within 4Å: Chain A: F.154, K.156, Y.180, W.254 Ligands: SO4.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.156 Water bridges: A:K.97 2HA.20: 5 residues within 4Å: Chain B: F.154, K.156, Y.180, W.254 Ligands: SO4.18 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.156, B:Y.180 Water bridges: B:K.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, H.-T. et al., Crystal structure of MDD in complex with Dihydroxyacetone. To be Published

Release Date

2011-08-24

Peptides

Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase

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