- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CU1: COPPER (I) ION(Non-covalent)
- 3 x CU: COPPER (II) ION(Non-covalent)
CU.2: 4 residues within 4Å:- Chain A: H.97, H.132
- Chain B: H.303
- Ligands: FMT.5
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Metal complexes: B:H.303, A:H.97, A:H.132
CU.7: 4 residues within 4Å:- Chain B: H.97, H.132
- Chain C: H.303
- Ligands: FMT.11
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain B- Metal complexes: C:H.303, B:H.97, B:H.132
CU.13: 4 residues within 4Å:- Chain A: H.303
- Chain C: H.97, H.132
- Ligands: FMT.18
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Metal complexes: A:H.303, C:H.97, C:H.132
- 8 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 9 residues within 4Å:- Chain A: G.137, M.138, V.139, P.140, W.141, Y.200, V.204, M.207
- Chain B: E.310
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:P.140
- Hydrogen bonds: A:M.138, A:W.141, A:Y.200
ACT.8: 5 residues within 4Å:- Chain B: T.225, G.226, I.297, H.316, K.318
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.297, B:K.318
- Hydrogen bonds: B:G.226
- Water bridges: B:K.318
- Salt bridges: B:H.316, B:K.318
ACT.9: 4 residues within 4Å:- Chain B: D.170, G.235, E.236, K.237
1 PLIP interactions:1 interactions with chain B- Water bridges: B:K.237
ACT.10: 8 residues within 4Å:- Chain B: G.137, M.138, V.139, P.140, W.141, V.204, M.207
- Chain C: E.310
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:M.138, B:W.141, C:E.310
ACT.14: 2 residues within 4Å:- Chain B: F.279
- Chain C: F.279
4 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: B:F.279
- Water bridges: A:F.279, C:F.279, C:F.279
ACT.15: 6 residues within 4Å:- Chain C: V.56, H.57, Y.181, V.182, P.183, T.203
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:H.57
- Water bridges: C:V.144, C:Y.181, C:T.203, C:T.203
ACT.16: 8 residues within 4Å:- Chain A: E.310
- Chain C: G.137, M.138, V.139, P.140, W.141, V.204, M.207
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:M.138, C:W.141
ACT.17: 6 residues within 4Å:- Chain C: T.225, G.226, A.229, I.297, H.316, K.318
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:I.297
- Hydrogen bonds: C:G.226
- Salt bridges: C:H.316, C:K.318
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 3 x FMT: FORMIC ACID(Non-functional Binders)
FMT.5: 8 residues within 4Å:- Chain A: D.95, H.97, H.132
- Chain B: H.252, I.254, H.303, L.305
- Ligands: CU.2
No protein-ligand interaction detected (PLIP)FMT.11: 7 residues within 4Å:- Chain B: D.95, H.132, A.134
- Chain C: I.254, H.303, L.305
- Ligands: CU.7
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.95
FMT.18: 8 residues within 4Å:- Chain A: I.254, H.303, L.305
- Chain C: D.95, H.132, A.134, V.139
- Ligands: CU.13
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.95, C:D.95
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tocheva, E.I. et al., Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules. Biochemistry (2008)
- Release Date
- 2008-04-01
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CU1: COPPER (I) ION(Non-covalent)
- 3 x CU: COPPER (II) ION(Non-covalent)
- 8 x ACT: ACETATE ION(Non-functional Binders)
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 3 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tocheva, E.I. et al., Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules. Biochemistry (2008)
- Release Date
- 2008-04-01
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C