SMTL ID : 2q0h.1

ABC Protein ArtP in complex with ADP/Mg2+, ATP-gamma-S hydrolyzed

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: S.64 Ligands: ADP.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.64, H2O.1, H2O.1, H2O.2 MG.4: 2 residues within 4Å: Chain B: S.64 Ligands: ADP.5 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:S.64, H2O.2, H2O.9, H2O.9, H2O.11

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 12 residues within 4Å: Chain A: F.34, V.39, P.58, S.59, G.60, S.61, G.62, K.63, S.64, T.65 Chain B: H.154 Ligands: MG.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.60, A:S.61, A:G.62, A:K.63, A:S.64, A:T.65, A:T.65, A:R.68 Water bridges: A:E.185 Salt bridges: A:K.63 pi-Stacking: A:F.34, A:F.34 ADP.5: 13 residues within 4Å: Chain A: H.154 Chain B: F.34, L.37, V.39, P.58, S.59, G.60, S.61, G.62, K.63, S.64, T.65 Ligands: MG.4 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.58, B:G.60, B:S.61, B:G.62, B:K.63, B:S.64, B:S.64, B:S.64, B:T.65, A:H.154 Water bridges: B:K.63, B:K.63 Salt bridges: B:K.63 pi-Stacking: B:F.34

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: L.143, K.146, E.208 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.146, A:E.208 GOL.6: 8 residues within 4Å: Chain B: N.120, I.121, L.123, A.124, P.125, R.172, A.175, M.176 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.120, B:I.121, B:A.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thaben, P.F. et al., Crystal structures of the ATP-binding cassette (ABC) protein ArtP from Geobacillus stearothermophilus reveal a stable dimer in the post hydrolysis state and an asymmetry in the dimerization region. To be Published

Release Date

2008-06-10

Peptides

ArtP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ArtP

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