SMTL ID : 2q3v.1 (1 other biounit)

Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At2g34160

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: K.19, K.20, R.22, Y.42 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:K.19, A:R.22 K.3: 2 residues within 4Å: Chain B: E.120, E.122 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.120, B:E.120, B:E.122, H2O.4 K.7: 4 residues within 4Å: Chain C: K.19, K.20, R.22, Y.42 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:K.19, C:R.22 K.9: 2 residues within 4Å: Chain D: E.120, E.122 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.120, D:E.120, D:E.122, H2O.11

8 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 4 residues within 4Å: Chain A: K.40, I.67, N.71, F.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.40 Water bridges: A:K.40 NO3.4: 6 residues within 4Å: Chain B: P.31, L.32, F.33 Chain C: E.66, I.67, N.70 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:N.70, B:F.33 Water bridges: B:L.32, B:L.32 NO3.5: 6 residues within 4Å: Chain B: E.66, I.67, N.70 Chain C: P.31, L.32, F.33 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:L.32, C:F.33, B:N.70 NO3.6: 5 residues within 4Å: Chain B: K.40, I.67, N.71, F.73 Chain C: F.33 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.40, B:K.40 NO3.8: 4 residues within 4Å: Chain C: K.40, I.67, N.71, F.73 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.40 Water bridges: C:K.40 NO3.10: 6 residues within 4Å: Chain A: E.66, I.67, N.70 Chain D: P.31, L.32, F.33 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:F.33, A:N.70 Water bridges: D:L.32, D:L.32 NO3.11: 6 residues within 4Å: Chain A: P.31, L.32, F.33 Chain D: E.66, I.67, N.70 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:N.70, A:L.32, A:F.33 NO3.12: 5 residues within 4Å: Chain A: F.33 Chain D: K.40, I.67, N.71, F.73 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.40, D:K.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Levin, E.J. et al., Ensemble refinement of protein crystal structures: validation and application. Structure (2007)

Release Date

2007-06-19

Peptides

Protein At2g34160: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Protein At2g34160

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