SMTL ID : 2q5g.3 (2 other biounits)

Ligand binding domain of PPAR delta receptor in complex with a partial agonist

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x 1FA: [(7-{[2-(3-MORPHOLIN-4-YLPROP-1-YN-1-YL)-6-{[4-(TRIFLUOROMETHYL)PHENYL]ETHYNYL}PYRIDIN-4-YL]THIO}-2,3-DIHYDRO-1H-INDEN- 4-YL)OXY]ACETIC ACID(Non-covalent)

1FA.1: 21 residues within 4Å: Chain A: M.34, L.61, V.87, R.90, C.91, Q.92, T.94, T.98, E.101, I.132, F.133, M.135, L.136, I.139, V.147, V.154, I.169, K.173, H.255, M.259 Chain D: W.70 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.87, A:R.90, A:F.133, A:L.136, A:I.139, A:V.147, A:I.169, A:K.173 Salt bridges: A:H.255 1FA.2: 21 residues within 4Å: Chain B: M.34, L.61, E.65, V.87, F.88, R.90, C.91, Q.92, T.94, T.98, M.135, L.136, I.139, L.145, V.147, V.154, I.169, I.170, K.173, H.255 Chain C: W.70 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:T.94, B:I.139, B:L.145, B:V.147, B:V.154, C:W.70 Hydrogen bonds: B:Q.92 Salt bridges: B:K.173, B:H.255 1FA.3: 21 residues within 4Å: Chain B: W.70 Chain C: M.34, L.61, V.87, R.90, C.91, Q.92, T.94, T.98, E.101, I.132, F.133, M.135, L.136, I.139, V.147, V.154, I.169, K.173, H.255, M.259 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:V.87, C:R.90, C:F.133, C:L.136, C:I.139, C:V.147, C:I.169, C:K.173 Hydrogen bonds: C:T.94 Salt bridges: C:H.255 1FA.4: 21 residues within 4Å: Chain A: W.70 Chain D: M.34, L.61, E.65, V.87, F.88, R.90, C.91, Q.92, T.94, T.98, M.135, L.136, I.139, L.145, V.147, V.154, I.169, I.170, K.173, H.255 10 PLIP interactions: 9 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:T.94, D:I.139, D:L.145, D:V.147, D:V.154, A:W.70 Hydrogen bonds: D:Q.92, D:T.94 Salt bridges: D:K.173, D:H.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pettersson, I. et al., Design of a partial PPARdelta agonist. Bioorg.Med.Chem.Lett. (2007)

Release Date

2008-06-03

Peptides

Peroxisome proliferator-activated receptor delta: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Peroxisome proliferator-activated receptor delta

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