SMTL ID : 2qm1.1 (1 other biounit)

Crystal structure of glucokinase from Enterococcus faecalis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.169, C.179, C.181, C.186 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.169, A:C.179, A:C.181, A:C.186 ZN.6: 4 residues within 4Å: Chain B: H.169, C.179, C.181, C.186 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.169, B:C.179, B:C.181, B:C.186

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: N.116, A.118, N.119, G.148 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.148, H2O.1 MG.7: 4 residues within 4Å: Chain B: N.116, A.118, N.119, G.148 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:G.148, H2O.13, H2O.13

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: V.79, D.80, I.81, H.158, G.162 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.80, A:I.81, A:H.158 Water bridges: A:E.82 GOL.4: 3 residues within 4Å: Chain A: R.245, F.248, Y.249 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.245, A:R.245 Water bridges: A:D.244, B:N.175 GOL.5: 3 residues within 4Å: Chain A: E.105, G.109, P.111 No protein-ligand interaction detected (PLIP) GOL.8: 3 residues within 4Å: Chain B: R.245, F.248, Y.249 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.249, B:Y.249 Water bridges: B:R.245, B:R.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Glucokinase from Enterococcus faecalis. To be Published

Release Date

2007-07-31

Peptides

Glucokinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucokinase

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