SMTL ID : 2qo1.1

2.6 Angstrom Crystal Structure of the Complex Between 11-(decyldithiocarbonyloxy)-undecanoic acid and Mycobacterium Tuberculosis FabH.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x VZZ: 11-[(MERCAPTOCARBONYL)OXY]UNDECANOIC ACID(Non-covalent)

VZZ.1: 9 residues within 4Å: Chain A: W.42, R.46, I.199, L.221, G.223, V.226, A.260, N.261, I.264 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.42, A:R.46 Hydrogen bonds: A:N.289 Water bridges: A:N.261 VZZ.3: 11 residues within 4Å: Chain B: I.166, I.199, L.221, G.223, P.224, V.226, F.227, A.260, N.261, I.264, N.289 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.166, B:F.227, B:I.264 Hydrogen bonds: B:N.289

2 x D1T: DECANE-1-THIOL(Non-covalent)

D1T.2: 13 residues within 4Å: Chain A: N.91, C.122, L.152, T.155, Q.201, P.217, F.218, V.219, S.291, G.320, A.321 Chain B: Q.96, T.97 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:N.91, A:L.152, A:Q.201, A:Q.201, A:V.219, A:V.219, B:Q.96, B:Q.96, B:T.97 D1T.4: 13 residues within 4Å: Chain A: Q.96, T.97 Chain B: N.91, C.122, L.152, T.155, F.167, I.199, Q.201, W.205, F.218, V.219, S.291 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:N.91, B:F.167, B:Q.201, B:W.205, B:V.219, A:Q.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sachdeva, S. et al., Separate Entrance and Exit Portals for Ligand Traffic in Mycobacterium tuberculosis FabH. Chem.Biol. (2008)

Release Date

2008-05-06

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-oxoacyl-[acyl-carrier-protein] synthase 3

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