SMTL ID : 2r1f.1 (1 other biounit)

Crystal structure of predicted aminodeoxychorismate lyase from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-dimer

Ligands

15 x CD: CADMIUM ION(Non-covalent)

CD.1: 4 residues within 4Å: Chain A: E.46, E.146, D.220, S.221 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.46, A:E.146, A:D.220, A:D.220, H2O.4 CD.2: 1 residues within 4Å: Chain A: H.227 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.227, H2O.5 CD.3: 1 residues within 4Å: Chain A: H.244 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.244, H2O.4, H2O.5, H2O.5, H2O.5 CD.4: 1 residues within 4Å: Chain A: E.80 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.80, H2O.3, H2O.4, H2O.5, H2O.6 CD.5: 2 residues within 4Å: Chain A: A.60, H.65 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.65, H2O.4, H2O.4, H2O.5 CD.6: 1 residues within 4Å: Chain A: D.94 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.94, H2O.3, H2O.5 CD.7: 2 residues within 4Å: Chain A: H.11, E.33 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.11, A:E.33 CD.8: 4 residues within 4Å: Chain A: L.81, E.82, H.112 Ligands: SO4.10 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.112 CD.9: 1 residues within 4Å: Chain A: E.85 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.85 CD.14: 4 residues within 4Å: Chain B: E.46, E.146, D.220, S.221 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.46, B:E.146, B:D.220, B:D.220, H2O.9 CD.15: 2 residues within 4Å: Chain B: R.58, H.65 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.65, H2O.9 CD.16: 2 residues within 4Å: Chain B: T.149, H.244 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:H.244, H2O.9, H2O.9, H2O.9, H2O.10 CD.17: 1 residues within 4Å: Chain B: D.94 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.94, B:D.94, H2O.10 CD.18: 1 residues within 4Å: Chain B: H.227 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.227 CD.19: 3 residues within 4Å: Chain B: L.81, E.82, H.112 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.82, B:H.112, H2O.9, H2O.10

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 6 residues within 4Å: Chain A: E.82, N.83, W.86, W.90, H.112 Ligands: CD.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.82, A:N.83, A:N.83, A:W.90 Salt bridges: A:H.112

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 6 residues within 4Å: Chain A: F.162, R.165, L.172, Q.173, Y.235, F.236 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.165, A:L.172, A:L.234, A:F.236 GOL.12: 8 residues within 4Å: Chain A: S.160, I.163, N.164, R.167, P.228, A.229, K.230, T.231 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.164, A:R.167, A:T.231, A:T.231 GOL.13: 6 residues within 4Å: Chain A: P.41, R.43 Chain B: P.41, L.42, R.43, Q.56 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:R.43, B:R.43, B:Q.56, A:P.41, A:R.43, A:R.43 Water bridges: A:R.43, A:R.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Predicted Aminodeoxychorismate Lyase from Escherichia coli. To be Published

Release Date

2007-09-04

Peptides

Predicted aminodeoxychorismate lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Predicted aminodeoxychorismate lyase

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