SMTL ID : 2r1f.2 (1 other biounit)

Crystal structure of predicted aminodeoxychorismate lyase from Escherichia coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-tetramer

Ligands

30 x CD: CADMIUM ION(Non-covalent)

CD.1: 4 residues within 4Å: Chain A: E.46, E.146, D.220, S.221 Ligand excluded by PLIP CD.2: 1 residues within 4Å: Chain A: H.227 Ligand excluded by PLIP CD.3: 1 residues within 4Å: Chain A: H.244 Ligand excluded by PLIP CD.4: 1 residues within 4Å: Chain A: E.80 Ligand excluded by PLIP CD.5: 2 residues within 4Å: Chain A: A.60, H.65 Ligand excluded by PLIP CD.6: 1 residues within 4Å: Chain A: D.94 Ligand excluded by PLIP CD.7: 4 residues within 4Å: Chain A: H.11, E.33 Chain D: H.11, E.33 Ligand excluded by PLIP CD.8: 4 residues within 4Å: Chain A: L.81, E.82, H.112 Ligands: SO4.10 Ligand excluded by PLIP CD.9: 1 residues within 4Å: Chain A: E.85 Ligand excluded by PLIP CD.14: 4 residues within 4Å: Chain B: E.46, E.146, D.220, S.221 Ligand excluded by PLIP CD.15: 2 residues within 4Å: Chain B: R.58, H.65 Ligand excluded by PLIP CD.16: 2 residues within 4Å: Chain B: T.149, H.244 Ligand excluded by PLIP CD.17: 1 residues within 4Å: Chain B: D.94 Ligand excluded by PLIP CD.18: 1 residues within 4Å: Chain B: H.227 Ligand excluded by PLIP CD.19: 3 residues within 4Å: Chain B: L.81, E.82, H.112 Ligand excluded by PLIP CD.20: 4 residues within 4Å: Chain C: E.46, E.146, D.220, S.221 Ligand excluded by PLIP CD.21: 1 residues within 4Å: Chain C: H.227 Ligand excluded by PLIP CD.22: 1 residues within 4Å: Chain C: H.244 Ligand excluded by PLIP CD.23: 1 residues within 4Å: Chain C: E.80 Ligand excluded by PLIP CD.24: 2 residues within 4Å: Chain C: A.60, H.65 Ligand excluded by PLIP CD.25: 1 residues within 4Å: Chain C: D.94 Ligand excluded by PLIP CD.26: 4 residues within 4Å: Chain B: H.11, E.33 Chain C: H.11, E.33 Ligand excluded by PLIP CD.27: 4 residues within 4Å: Chain C: L.81, E.82, H.112 Ligands: SO4.29 Ligand excluded by PLIP CD.28: 1 residues within 4Å: Chain C: E.85 Ligand excluded by PLIP CD.33: 4 residues within 4Å: Chain D: E.46, E.146, D.220, S.221 Ligand excluded by PLIP CD.34: 2 residues within 4Å: Chain D: R.58, H.65 Ligand excluded by PLIP CD.35: 2 residues within 4Å: Chain D: T.149, H.244 Ligand excluded by PLIP CD.36: 1 residues within 4Å: Chain D: D.94 Ligand excluded by PLIP CD.37: 1 residues within 4Å: Chain D: H.227 Ligand excluded by PLIP CD.38: 3 residues within 4Å: Chain D: L.81, E.82, H.112 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 6 residues within 4Å: Chain A: E.82, N.83, W.86, W.90, H.112 Ligands: CD.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.82, A:N.83, A:N.83, A:W.90 Salt bridges: A:H.112 SO4.29: 6 residues within 4Å: Chain C: E.82, N.83, W.86, W.90, H.112 Ligands: CD.27 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:E.82, C:N.83, C:N.83, C:W.90 Salt bridges: C:H.112

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 6 residues within 4Å: Chain A: F.162, R.165, L.172, Q.173, Y.235, F.236 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.165, A:L.172, A:L.234, A:F.236 GOL.12: 8 residues within 4Å: Chain A: S.160, I.163, N.164, R.167, P.228, A.229, K.230, T.231 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.164, A:R.167, A:T.231, A:T.231 GOL.13: 6 residues within 4Å: Chain A: P.41, R.43 Chain B: P.41, L.42, R.43, Q.56 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:R.43, B:R.43, B:Q.56, A:P.41, A:R.43, A:R.43 Water bridges: A:R.43, A:R.43 GOL.30: 6 residues within 4Å: Chain C: F.162, R.165, L.172, Q.173, Y.235, F.236 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.165, C:L.172, C:L.234, C:F.236 GOL.31: 8 residues within 4Å: Chain C: S.160, I.163, N.164, R.167, P.228, A.229, K.230, T.231 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.164, C:R.167, C:T.231, C:T.231 GOL.32: 6 residues within 4Å: Chain C: P.41, R.43 Chain D: P.41, L.42, R.43, Q.56 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:P.41, C:R.43, C:R.43, D:R.43, D:R.43, D:Q.56 Water bridges: C:R.43, C:R.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Predicted Aminodeoxychorismate Lyase from Escherichia coli. To be Published

Release Date

2007-09-04

Peptides

Predicted aminodeoxychorismate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Predicted aminodeoxychorismate lyase

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