- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 12 residues within 4Å:- Chain A: H.111, H.113, N.114, D.115, H.116, H.191, D.213, Y.216, H.259
- Ligands: ZN.1, ZN.2, GOL.5
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.114
- Water bridges: A:Y.216
- Salt bridges: A:H.113, A:H.116, A:H.191
PO4.4: 5 residues within 4Å:- Chain A: H.243, Q.246, Y.247, S.250, R.251
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.246, A:Q.246, A:S.250
- Salt bridges: A:R.251
PO4.9: 12 residues within 4Å:- Chain B: H.111, H.113, N.114, D.115, H.116, H.191, D.213, Y.216, H.259
- Ligands: ZN.7, ZN.8, GOL.11
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:N.114, B:D.115, B:Y.216, B:Y.216
- Salt bridges: B:H.113, B:H.116, B:H.191
PO4.10: 5 residues within 4Å:- Chain B: H.243, Q.246, Y.247, S.250, R.251
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.246, B:S.250
- Salt bridges: B:H.243, B:R.251
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 9 residues within 4Å:- Chain A: I.13, V.15, I.41, N.114, D.115, Y.216, H.259
- Ligands: ZN.1, PO4.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.114, A:Y.216
GOL.6: 3 residues within 4Å:- Chain A: A.136, T.137, R.140
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.136, A:R.140
GOL.11: 11 residues within 4Å:- Chain B: I.13, V.15, I.20, I.41, A.80, N.114, D.115, Y.216, H.259
- Ligands: ZN.7, PO4.9
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.114
- Water bridges: B:Y.216
GOL.12: 6 residues within 4Å:- Chain A: D.233, I.235
- Chain B: T.189, D.233, I.235, G.236
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Water bridges: A:G.236, B:R.239
- Hydrogen bonds: B:G.236
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Structure and specificity of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens. Biochemistry (2007)
- Release Date
- 2007-10-09
- Peptides
- Zn-dependent hydrolases: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Structure and specificity of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens. Biochemistry (2007)
- Release Date
- 2007-10-09
- Peptides
- Zn-dependent hydrolases: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C